0.2.3

cpanse@fgcz-r-028:~ > /scratch/cpanse/R/R-devel/bin/R CMD check __checkouts/prozor_0.2.3.tar.gz  --as-cran
* using log directory ‘/home/cpanse/prozor.Rcheck’
* using R Under development (unstable) (2017-04-19 r72556)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--as-cran’
* checking for file ‘prozor/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘prozor’ version ‘0.2.3’
* checking CRAN incoming feasibility ... Note_to_CRAN_maintainers
Maintainer: ‘Witold Wolski <[email protected]>’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘prozor’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK

.Rbuildignore

@@ -1,7 +1,7 @@
 ^.*\.Rproj$
 ^\.Rproj\.user$
 ^\.Rhistory$
-^\.gitignore$
+^.*gitignore$
 ^\.git$
 ^\.travis\.yml$
-^inst/dataignore/$
+^.*inst/dataignore/.*$

DESCRIPTION

@@ -1,8 +1,7 @@
 Package: prozor
 Type: Package
 Title: Minimal Protein Set Explaining Peptide Spectrum Matches
-Version: 0.2.2
-Date: 2015-12-09
+Version: 0.2.3
 Author: Witold Wolski
 Maintainer: Witold Wolski <[email protected]>
 Description: Determine minimal protein set explaining
@@ -15,13 +14,10 @@ Imports:
     Matrix,
     doParallel,
     foreach,
-    seqinr,
     plyr,
+    seqinr,
     stringr
 URL: https://github.com/protviz/prozor
 BugReports: https://github.com/protviz/prozor/issues
 Repository: CRAN
 RoxygenNote: 6.0.1
-Suggests: knitr,
-    rmarkdown
-VignetteBuilder: knitr

R/zzz.R

@@ -2,7 +2,7 @@
 
 .onAttach <- function(lib, pkg){
 	if(interactive()){
-		version <- packageVersion('prozor')
+		version <- utils::packageVersion('prozor')
 		packageStartupMessage("Package 'prozor' version ", version)
 		# packageStartupMessage("Type 'citation(\"prozor\")' for citing this R package in publications.")
 	  invisible()