0.6.0: ✨ Allow passing vcf as 2nd arg to macros (#45) (#46)

• Now vcf (the instance of cyvcf2.VCF is allowed to be passed as 2nd argument to continuous and categorical macros (#45).

  from vcfstats.macros import cont
  
  @cont
  def GLOBAL_POS(variant, vcf):
    chrom = variant.CHROM.replace("chr", "")
    chridx = 23 if chrom == "X" else 24 if chrom == "Y" else int(chrom)
    prev_chrom_lens = sum(vcf.seqlens[:(chridx-1)]
    return prev_chrom_lens + variant.POS

  Check the API documentation of cyvcf2 to see what information we can get from vcf.

0.5.0 (#39)

• ➕ Use argx instead of pyparam

0.4.3 (#37)

• 🚑 Fix numpy error raised from plotnine (#35)
• 📝 Update usage with docker in README.md (#33)
• 👷 Add python3.10 to CI

0.4.2

• 🐛 Fix config file not used correctly (#27)

What's Changed

• 0.4.2 by @pwwang in #28

Full Changelog: 0.4.1...0.4.2

0.4.1

• 📝 Add more examples regarding #20
• 🐛 Fix devpars by default a Namespace rather than a dict (#21, #22)

What's Changed

• 0.4.1 by @pwwang in #23

Full Changelog: 0.4.0...0.4.1

0.4.0 (#19)

• ⬆️ Drop support for python 3.8 (brentp/cyvcf2#181)
• 🚨 Use python3.9 in Dockerfile
• ⬆️️ Upgrade pyparam to 0.5
• ⬆️ Upgrade and pin deps
• 📝 Add more examples (#15, #17)
• 👷 Add docker build in CI

0.3.0 (#16)

• Introduce enhancements (#15)

0.2.0

• Use plotnine instead of ggplot2 so no R is needed
• Add figfmt to generate different format of figures other than png

0.1.0

• Use lark-parser to parse formulas
• Add ggrepel in Dockerfile
• Use rich.table to print macros
• Allow python -m, avoid root logger configuration.

0.0.6

• Adopt lastest pyparam.