Harmonise folder structure for workflow outputs #151
Workflow file for this run
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| name: Test workflows | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| schedule: | |
| - cron: "0 5 * * TUE" | |
| # Cancel any in-progress runs when a new run is triggered | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| env: | |
| CACHE_NUMBER: 0 # Change this value to manually reset the environment cache | |
| jobs: | |
| run-tests: | |
| name: OS | |
| runs-on: ${{ matrix.os }}-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu, macos] #, windows] | |
| include: | |
| - os: ubuntu | |
| env_file: envs/linux-pinned.yaml | |
| - os: macos | |
| env_file: envs/macos-pinned.yaml | |
| # - os: windows | |
| # env_file: envs/windows-pinned.yaml | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Setup micromamba | |
| uses: mamba-org/setup-micromamba@v2 | |
| with: | |
| micromamba-version: '1.5.9-1' | |
| environment-file: ${{ matrix.env_file }} | |
| log-level: debug | |
| init-shell: bash | |
| cache-environment: true | |
| cache-downloads: true | |
| - name: Set cache dates | |
| run: | | |
| echo "WEEK=$(date +'%Y%U')" >> $GITHUB_ENV | |
| - name: Cache data and cutouts folders | |
| uses: actions/cache@v4 | |
| with: | |
| path: | | |
| data | |
| cutouts | |
| key: data-cutouts-${{ env.WEEK }}-${{ env.CACHE_NUMBER }} | |
| - name: Micromamba list | |
| run: micromamba list | |
| - name: Run Test | |
| run: make test | |
| - name: Upload artifacts | |
| if: always() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: results-${{ matrix.os }} | |
| path: | | |
| logs | |
| .snakemake/log | |
| results | |
| retention-days: 3 | |
| # - name: Test plotting and summaries | |
| # run: | | |
| # snakemake --cores all plot_all_p_nom | |
| # snakemake --cores all plot_all_summaries | |
| # snakemake --cores all make_all_summaries | |
| # rm -rf resources/*.nc resources/*.geojson resources/*.h5 networks results |