remove FAS_all as benchmark, use FAS with all species as default #81
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Docker Image CI | |
| on: | |
| push: | |
| pull_request: | |
| branches: [ master ] | |
| release: | |
| type: [published] | |
| env: | |
| TEST_TAG_PYTHON: qfobenchmark/python:test | |
| TEST_TAG_DARWIN: qfobenchmark/darwin:test | |
| TEST_TAG_FAS: qfobechmark/fas_bechmark:test | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - name: Docker python meta | |
| id: meta_python | |
| uses: docker/metadata-action@v5 | |
| with: | |
| # list of Docker images to use as base name for tags | |
| images: | | |
| qfobenchmark/python | |
| # generate Docker tags based on the following events/attributes | |
| tags: | | |
| type=schedule | |
| type=ref,event=branch | |
| type=ref,event=pr | |
| type=semver,pattern={{version}} | |
| type=semver,pattern={{major}}.{{minor}} | |
| type=semver,pattern={{major}} | |
| type=sha | |
| - name: Docker darwin meta | |
| id: meta_darwin | |
| uses: docker/metadata-action@v5 | |
| with: | |
| # list of Docker images to use as base name for tags | |
| images: | | |
| qfobenchmark/darwin | |
| # generate Docker tags based on the following events/attributes | |
| tags: | | |
| type=schedule | |
| type=ref,event=branch | |
| type=ref,event=pr | |
| type=semver,pattern={{version}} | |
| type=semver,pattern={{major}}.{{minor}} | |
| type=semver,pattern={{major}} | |
| type=sha | |
| - name: Docker FAS meta | |
| id: meta_fas | |
| uses: docker/metadata-action@v5 | |
| with: | |
| # list of Docker images to use as base name for tags | |
| images: | | |
| qfobenchmark/fas_benchmark | |
| # generate Docker tags based on the following events/attributes | |
| tags: | | |
| type=schedule | |
| type=ref,event=branch | |
| type=ref,event=pr | |
| type=semver,pattern={{version}} | |
| type=semver,pattern={{major}}.{{minor}} | |
| type=semver,pattern={{major}} | |
| type=sha | |
| - name: Set up QEMU | |
| uses: docker/setup-qemu-action@v3 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Build and export python image to docker for testing | |
| uses: docker/build-push-action@v5 | |
| with: | |
| context: . | |
| file: Dockerfile_qfo_python | |
| load: true | |
| tags: ${{ env.TEST_TAG_PYTHON }} | |
| - name: Test Python | |
| run: | | |
| docker run --rm -i ${{ env.TEST_TAG_PYTHON }} python --version | |
| - name: Build and export darwin image to docker for testing | |
| uses: docker/build-push-action@v5 | |
| with: | |
| context: . | |
| file: Dockerfile_qfo_darwin | |
| load: true | |
| tags: ${{ env.TEST_TAG_DARWIN }} | |
| - name: Test Darwin image | |
| run: | | |
| mkdir -p output | |
| docker run --rm -i -v $PWD/output:/out ${{ env.TEST_TAG_DARWIN }} bash -c "echo 'gigahertz(); done' | darwin -q -E -o /out/speed.txt" | |
| echo "$?" | |
| ls -l output/ | |
| - name: Build and export fas_benchmark image to docker for testing | |
| uses: docker/build-push-action@v5 | |
| with: | |
| context: . | |
| file: Dockerfile_qfo_fas | |
| load: true | |
| tags: ${{ env.TEST_TAG_FAS }} | |
| - name: Test FAS | |
| run: | | |
| docker run --rm -i ${{ env.TEST_TAG_FAS }} fas.runMultiTaxa --version | |
| - name: Login to DockerHub | |
| if: github.event_name != 'pull_request' | |
| uses: docker/login-action@v3 | |
| with: | |
| username: ${{ secrets.DOCKER_HUB_USERNAME }} | |
| password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }} | |
| - name: Build and push | |
| uses: docker/build-push-action@v5 | |
| with: | |
| context: . | |
| file: Dockerfile_qfo_python | |
| platforms: linux/amd64 | |
| push: ${{ github.event_name != 'pull_request' }} | |
| tags: ${{ steps.meta_python.outputs.tags }} | |
| labels: ${{ steps.meta_python.outputs.labels }} | |
| - name: Build and push darwin | |
| uses: docker/build-push-action@v5 | |
| with: | |
| context: . | |
| file: Dockerfile_qfo_darwin | |
| platforms: linux/amd64 | |
| push: ${{ github.event_name != 'pull_request' }} | |
| tags: ${{ steps.meta_darwin.outputs.tags }} | |
| labels: ${{ steps.meta_darwin.outputs.labels }} | |
| - name: Build and push fas | |
| uses: docker/build-push-action@v5 | |
| with: | |
| context: . | |
| file: Dockerfile_qfo_fas | |
| platforms: linux/amd64 | |
| push: ${{ github.event_name != 'pull_request' }} | |
| tags: ${{ steps.meta_fas.outputs.tags }} | |
| labels: ${{ steps.meta_fas.outputs.labels }} |