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@qiime2

QIIME 2

Welcome to the QIIME 2 GitHub Organization! 👋

If you're a QIIME 2 user or developer, or are thinking about becoming one, refer to our Support Guidelines for details on how to learn or get help with QIIME 2.

If you're interested in contributing to repositories in the qiime2 GitHub organization, please start by reading our Contributing Guidelines.

This organization is primarily managed by the Caporaso Lab at Northern Arizona University, but has contributors from all over the world. If you have questions that aren't covered in the resources above, the best way to reach us is on the QIIME 2 Forum - it's where we hang out.

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  1. qiime2 qiime2 Public

    Official repository for the QIIME 2 framework.

    Python 493 240

  2. distributions distributions Public

    Makefile 1 5

  3. q2cli q2cli Public

    Command line interface for QIIME 2

    Python 19 24

  4. docs docs Public

    Python 21 58

Repositories

Showing 10 of 76 repositories
  • library Public

    A website for sharing QIIME 2 Plugins

    qiime2/library’s past year of commit activity
    Svelte 0 BSD-3-Clause 1 4 0 Updated Feb 17, 2025
  • distributions Public
    qiime2/distributions’s past year of commit activity
    Makefile 1 BSD-3-Clause 5 5 2 Updated Feb 16, 2025
  • discourse-unhandled-tagger Public Forked from discourse/discourse-unhandled-tagger

    Simple plugin that tags topics automatically if non-staff replies

    qiime2/discourse-unhandled-tagger’s past year of commit activity
    Ruby 0 MIT 8 0 0 Updated Feb 14, 2025
  • resources Public

    Source for QIIME 2 Resources page.

    qiime2/resources’s past year of commit activity
    TeX 1 BSD-3-Clause 4 1 0 Updated Feb 13, 2025
  • qiime2/static-site-infrastructure’s past year of commit activity
    Dockerfile 0 BSD-3-Clause 3 3 0 Updated Feb 13, 2025
  • q2doc Public

    A MyST executable plugin for documenting QIIME 2 plugins.

    qiime2/q2doc’s past year of commit activity
    Python 0 0 1 0 Updated Feb 13, 2025
  • amplicon-docs Public

    Source for QIIME 2 amplicon documentation.

    qiime2/amplicon-docs’s past year of commit activity
    Makefile 0 0 0 0 Updated Feb 13, 2025
  • q2-vsearch Public

    vsearch plugin for QIIME 2

    qiime2/q2-vsearch’s past year of commit activity
    Python 6 BSD-3-Clause 22 8 0 Updated Feb 13, 2025
  • library-plugins Public

    Stores a list of the repos that are included in the QIIME 2 library

    qiime2/library-plugins’s past year of commit activity
    0 BSD-3-Clause 5 0 1 Updated Feb 11, 2025
  • q2-dada2 Public

    QIIME 2 plugin wrapping DADA2

    qiime2/q2-dada2’s past year of commit activity
    Python 20 BSD-3-Clause 37 10 1 Updated Feb 11, 2025