lib-community-ci.yaml

# # Example of workflow trigger for calling workflow (the client).
# name: ci-vizard
# on:
#   pull_request:
#     branches: ["dev"]
#   push:
#     branches: ["dev"]
# jobs:
#   ci:
#     uses: qiime2/distributions/.github/workflows/lib-community-ci.yaml@dev
#     with:
#       distro: amplicon
#       release-epoch: 2024.10
#       github-org-name: qiime2
#       github-repo-name: q2-vizard
# TODO: note that default is main branch; can leave blank unless special target
#       github-env-ref: dev
#       env-file-name: 2024.5-vizard-environment.yml

on:
  workflow_call:
    inputs:
      distro:
        description: "Distro to test with"
        type: string
        required: true

      release-epoch:
        description: "Release target for distro to test with"
        type: number
        required: true

      github-org:
        description: "Organization or username on Github"
        type: string
        required: true

      github-repo:
        description: "Plugin repository name on Github"
        type: string
        required: true

      github-env-ref:
        description: "Target branch/ref name on Github for environment file"
        type: string
        required: false
        default: ''

      env-file-name:
        description: "Name of environment file to test with"
        type: string
        required: true

jobs:
  install-env-and-test:
    strategy:
      matrix:
        os: [ubuntu-latest, macos-12]
    runs-on: ${{ matrix.os }}

    env:
      name: ${{ inputs.github-repo }}
      filepath: https://raw.githubusercontent.com/${{ inputs.github-org }}/${{ inputs.github-repo }}/${{ inputs.github-env-ref }}/environment-files/${{ inputs.env-file-name }}

      - uses: actions/checkout@v3

      - uses: conda-incubator/setup-miniconda@v3
        with:
          miniconda-version: 'latest'
          python-version: 3.9
          environment-file: ${{ env.filepath }}
          activate-environment: ${{ env.name }}

      - name: 'install pytest, run qiime info & run tests'
        shell: bash -el {0}
        run: |
          conda install pytest
          qiime info
          pytest

      # - name: 'Install and activate test environment'
      #   run: |
      #     conda env create
      #     -n ${{ env.github_repo }}
      #     -f https://raw.githubusercontent.com/{{ github-org }}/{{ github-repo }}/{{ github-env-ref }}/environment-files/{{ env-file-name }}
      #     conda activate ${{ env.github_repo }}

      # TODO: run tests using makefile
      - name: 'Run tests for ${{ env.github_repo }}'