Merge pull request #3 from qxcv/update-dockerfile

Dockerfile from Felipe's students

asnets/Dockerfile

@@ -1,14 +1,45 @@
-FROM ubuntu:19.10
-RUN apt-get update -y && apt-get install -y python3-numpy python3-dev \
-  python3-pip python3-wheel python3-venv flex bison build-essential \
-  autoconf libtool git cmake libboost-all-dev
-RUN useradd -ms /bin/bash asnets
-COPY . /home/asnets/asnets
-RUN chown -R asnets:asnets /home/asnets/asnets
-USER asnets
-WORKDIR /home/asnets/asnets
-RUN python3 -m venv ${HOME}/venv-asnets
-RUN . ${HOME}/venv-asnets/bin/activate \
-  && echo . ${HOME}/venv-asnets/bin/activate >> ${HOME}/.bashrc \
-  && pip install --upgrade pip \
-  && pip install -e ${HOME}/asnets/
+# Dockerfile for asnets
+#
+# To build:
+# docker build -t asnets-bionic -f asnets-bionic.dockerfile .
+#
+# To run:
+# docker run -i --rm --mount type=bind,source=<full_path_to_shared_dir>,target=/home/asnets_user/shared -t asnets-bionic /bin/bash
+
+# Base container.
+FROM ubuntu:bionic
+
+# Install packages.
+RUN apt-get update \
+    && DEBIAN_FRONTEND=noninteractive apt-get install -y \
+       python3-numpy python3-dev python3-pip python3-wheel python3-venv flex \
+       bison build-essential autoconf libtool git libboost-all-dev cmake \
+       libhdf5-dev g++ git make
+
+# Set up asnets user and group.
+RUN groupadd -g 999 asnets_user \
+    && useradd -r -u 999 -g asnets_user asnets_user \
+    && mkdir /home/asnets_user \
+    && chown -R asnets_user:asnets_user /home/asnets_user \
+    && adduser asnets_user sudo \
+    && echo "asnets ALL=(ALL) NOPASSWD: ALL" >> /etc/sudoers
+
+USER asnets_user
+
+# Make sure LD_LIBRARY_PATH is set correctly to include /usr/local/lib.
+ENV LD_LIBRARY_PATH /usr/local/lib:/usr/local/lib/aarch64-linux-gnu:${LD_LIBRARY_PATH}
+
+WORKDIR /home/asnets_user
+
+# Install ASNets
+RUN git clone https://github.com/qxcv/asnets.git
+
+RUN python3 -m venv venv-asnets && . venv-asnets/bin/activate \
+    && pip3 install --upgrade pip \
+    && pip3 install wheel cython numpy pkgconfig protobuf==3.19.6 werkzeug
+
+RUN . venv-asnets/bin/activate && pip3 install -e asnets/asnets
+
+RUN echo 'source ~/venv-asnets/bin/activate' >> ~/.bashrc
+
+RUN echo 'ulimit -S -v 64000000' >> ~/.bashrc