Merge pull request #45 from ratt-ru/chaos #84
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| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: Python package | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ ubuntu-20.04, ubuntu-22.04 ] | |
| python-version: ["3.8", "3.9", "3.10"] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install Poetry | |
| uses: snok/install-poetry@v1 | |
| with: | |
| version: 1.4.0 | |
| virtualenvs-create: true | |
| installer-parallel: false | |
| - name: Install package | |
| run: | | |
| poetry install --with tests --no-interaction | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| poetry run flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| poetry run flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Test conversion to .txt models | |
| run: | | |
| poetry run tigger-convert $GITHUB_WORKSPACE/test/3C147-HI6.refmodel.lsm.html /tmp/output.txt -f \ | |
| --output-format "name ra_d dec_d i q u v i q u v spi rm emaj_s emin_s pa_d freq0" | |
| poetry run tigger-convert $GITHUB_WORKSPACE/test/3C147-HI6.refmodel.lsm.html /tmp/output.recentred.txt -f --center 85.5deg,49.9deg --rename \ | |
| --output-format "name ra_d dec_d i q u v i q u v spi rm emaj_s emin_s pa_d freq0" | |
| echo "Checking reference LSM" | |
| diff $GITHUB_WORKSPACE/test/3C147-HI6.refmodel.reference.txt /tmp/output.txt | |
| echo "Checking recentred reference LSM" | |
| diff $GITHUB_WORKSPACE/test/3C147-HI6.refmodel.recentred.reference.txt /tmp/output.recentred.txt | |
| - name: Test reverse conversion to .lsm.html models | |
| run: | | |
| poetry run tigger-convert /tmp/output.txt /tmp/output.lsm.html -f | |
| - name: Test .gaul conversions | |
| run: | | |
| poetry run tigger-convert $GITHUB_WORKSPACE/test/deep4.gaul /tmp/deep4.lsm.html -f | |
| poetry run tigger-convert $GITHUB_WORKSPACE/test/deep4.gaul /tmp/deep4.txt -f --output-format "name ra_d dec_d i q u v spi rm emaj_s emin_s pa_d freq0" | |
| diff $GITHUB_WORKSPACE/test/deep4.reference.txt /tmp/deep4.txt | |
| - name: Test .AIPSCC conversions | |
| run: | | |
| gunzip <$GITHUB_WORKSPACE/test/3C147-L-A-CLEAN.fits.gz >/tmp/3C147-L-A-CLEAN.fits | |
| poetry run tigger-convert /tmp/3C147-L-A-CLEAN.fits /tmp/3C147-L-A-CLEAN.fits.lsm.html -f | |
| poetry run tigger-convert /tmp/3C147-L-A-CLEAN.fits.lsm.html /tmp/3C147-L-A-CLEAN.txt -f --output-format "name ra_d dec_d i q u v" | |
| zdiff $GITHUB_WORKSPACE/test/3C147-L-A-CLEAN.txt.gz /tmp/3C147-L-A-CLEAN.txt | |
| - name: Testing tigger-restore and tigger-make-brick | |
| run: | | |
| cp $GITHUB_WORKSPACE/test/3C147tmp.fits /tmp | |
| poetry run tigger-make-brick $GITHUB_WORKSPACE/test/3C147-HI6.refmodel.lsm.html /tmp/3C147tmp.fits | |
| poetry run tigger-restore -f $GITHUB_WORKSPACE/test/3C147tmp.fits $GITHUB_WORKSPACE/test/3C147-HI6.refmodel.lsm.html /tmp/restored.fits | |
| - name: Test tigger-tag | |
| run: | | |
| poetry run tigger-tag $GITHUB_WORKSPACE/test/3C147-HI6.refmodel.lsm.html 'r<0.5d' inner=1 -o /tmp/tmp.lsm.html -f | |
| - name: Test .lsm to ds9 region file conversion | |
| run: | | |
| echo "Checking lsm.html to .reg conversion" | |
| poetry run tigger-convert $GITHUB_WORKSPACE/test/3C147-HI6.refmodel.lsm.html /tmp/3C147-HI6.refmodel.lsm.reg -f |