When metadata_url is provided, use it

reichlab · Nov 25, 2024 · 03dee17 · 03dee17
1 parent 8c1bf87
commit 03dee17
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/src/cladetime/sequence.py b/src/cladetime/sequence.py
@@ -70,7 +70,7 @@ def get_metadata(
         # get sequence metadata from a URL
         file_suffix = Path(urlparse(metadata_url).path).suffix
         if file_suffix in [".tsv", ".zst"]:
-            metadata = pl.scan_csv(metadata_path, separator="\t", n_rows=num_rows)
+            metadata = pl.scan_csv(metadata_url, separator="\t", n_rows=num_rows)
         elif file_suffix == ".xz":
             # pytyon's lzma module doesn't support opening via HTTP, so use requests
             # to download the file in chunks and then decompress it