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Remove column validations from summarize_clades #60

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merged 1 commit into from
Nov 14, 2024

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bsweger
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@bsweger bsweger commented Nov 14, 2024

Summarize_clades was doing a collect_schema operation to ensure that items in the group_by paramater exist as colums in the sequence metadata.

However, testing on a lower-memory laptop revealed that collect_schema was too memory intensive to introduce in the middle of LazyFrame handling, so this PR removes it.

Summarize_clades was doing a collect_schema operation to ensure
that items in the group_by paramater exist as colums in the
sequence metadata. However, testing on a lower-memory laptop
revealed that collect_schema was too memory intensive to
introduce in the middle of LazyFrame handling, so we'll
take it out.
@bsweger bsweger requested a review from elray1 November 14, 2024 15:11
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lgtm

@bsweger bsweger merged commit 714ef7b into main Nov 14, 2024
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@bsweger bsweger deleted the bsweger/remove-column-checks/hotfix branch November 14, 2024 16:34
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2 participants