Preparation for release of v1.3.2

robvanholstein · Jan 23, 2021 · 1966f59 · 1966f59
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Showing 21 changed files with 41 additions and 29 deletions.
diff --git a/docs/build/doctrees/changelog.doctree b/docs/build/doctrees/changelog.doctree
diff --git a/docs/build/doctrees/environment.pickle b/docs/build/doctrees/environment.pickle
diff --git a/docs/build/html/.buildinfo b/docs/build/html/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 618eca74e9349ccfcbb8425e2d84e7a6
+config: ced7332a251a8231d0a8b9c93920bc51
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/docs/build/html/_sources/changelog.rst.txt b/docs/build/html/_sources/changelog.rst.txt
@@ -14,6 +14,9 @@ Changelog & to-do
 Changelog
 ---------
 
+v1.3.2 January 2021, R.G. van Holstein
+ - Corrected a bug that prevented reductions to be performed when dark and flat files are included in the raw subdirectory
+
 v1.3.1 September 2020, R.G. van Holstein
  - Added a command-line option (irdap \\-\\-print) to toggle printing of log statements in the terminal
 
@@ -73,7 +76,7 @@ v0.1.2 June 2019, R.G. van Holstein:
 
 To-do high priority
 -------------------
-
+   - Automatically optimize the annulus for star polarization subtraction by iterativey updating the annulus by excluding disk signal and companions etc.
    - Improve computation of stellar DoLP and AoLP and corresponding uncertainties (standard error of mean) by sampling from Gaussian distributions with Monte Carlo
    - Correct error in computation of photon noise for Q and U images that uses signal in Q and U rather than I_Q and I_U.
    - Make the data reduction work for data taken before approximately May 2015 that do not contain the header keyword indicating the Stokes parameter (using the HWP angle instead)

diff --git a/docs/build/html/_static/documentation_options.js b/docs/build/html/_static/documentation_options.js
@@ -1,6 +1,6 @@
 var DOCUMENTATION_OPTIONS = {
     URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'),
-    VERSION: '1.3.1',
+    VERSION: '1.3.2',
     LANGUAGE: 'None',
     COLLAPSE_INDEX: false,
     FILE_SUFFIX: '.html',

diff --git a/docs/build/html/acknowledgements.html b/docs/build/html/acknowledgements.html
@@ -8,7 +8,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>Acknowledgements &mdash; IRDAP 1.3.1 documentation</title>
+  <title>Acknowledgements &mdash; IRDAP 1.3.2 documentation</title>
 
 
 
@@ -60,7 +60,7 @@
 
 
               <div class="version">
-                1.3.1
+                1.3.2
               </div>
 
 

diff --git a/docs/build/html/changelog.html b/docs/build/html/changelog.html
@@ -8,7 +8,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>Changelog &amp; to-do &mdash; IRDAP 1.3.1 documentation</title>
+  <title>Changelog &amp; to-do &mdash; IRDAP 1.3.2 documentation</title>
 
 
 
@@ -61,7 +61,7 @@
 
 
               <div class="version">
-                1.3.1
+                1.3.2
               </div>
 
 
@@ -171,6 +171,11 @@ <h1>Changelog &amp; to-do<a class="headerlink" href="#changelog-to-do" title="Pe
 <div class="section" id="changelog">
 <h2>Changelog<a class="headerlink" href="#changelog" title="Permalink to this headline">¶</a></h2>
 <dl class="docutils">
+<dt>v1.3.2 January 2021, R.G. van Holstein</dt>
+<dd><ul class="first last simple">
+<li>Corrected a bug that prevented reductions to be performed when dark and flat files are included in the raw subdirectory</li>
+</ul>
+</dd>
 <dt>v1.3.1 September 2020, R.G. van Holstein</dt>
 <dd><ul class="first last simple">
 <li>Added a command-line option (irdap --print) to toggle printing of log statements in the terminal</li>
@@ -260,6 +265,7 @@ <h2>Changelog<a class="headerlink" href="#changelog" title="Permalink to this he
 <h2>To-do high priority<a class="headerlink" href="#to-do-high-priority" title="Permalink to this headline">¶</a></h2>
 <blockquote>
 <div><ul class="simple">
+<li>Automatically optimize the annulus for star polarization subtraction by iterativey updating the annulus by excluding disk signal and companions etc.</li>
 <li>Improve computation of stellar DoLP and AoLP and corresponding uncertainties (standard error of mean) by sampling from Gaussian distributions with Monte Carlo</li>
 <li>Correct error in computation of photon noise for Q and U images that uses signal in Q and U rather than I_Q and I_U.</li>
 <li>Make the data reduction work for data taken before approximately May 2015 that do not contain the header keyword indicating the Stokes parameter (using the HWP angle instead)</li>

diff --git a/docs/build/html/citing.html b/docs/build/html/citing.html
@@ -8,7 +8,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>Citing IRDAP &mdash; IRDAP 1.3.1 documentation</title>
+  <title>Citing IRDAP &mdash; IRDAP 1.3.2 documentation</title>
 
 
 
@@ -61,7 +61,7 @@
 
 
               <div class="version">
-                1.3.1
+                1.3.2
               </div>
 
 

diff --git a/docs/build/html/configfile.html b/docs/build/html/configfile.html
@@ -8,7 +8,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>Configuration file &mdash; IRDAP 1.3.1 documentation</title>
+  <title>Configuration file &mdash; IRDAP 1.3.2 documentation</title>
 
 
 
@@ -61,7 +61,7 @@
 
 
               <div class="version">
-                1.3.1
+                1.3.2
               </div>
 
 

diff --git a/docs/build/html/contributing.html b/docs/build/html/contributing.html
@@ -8,7 +8,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>Contributing &amp; issues &mdash; IRDAP 1.3.1 documentation</title>
+  <title>Contributing &amp; issues &mdash; IRDAP 1.3.2 documentation</title>
 
 
 
@@ -61,7 +61,7 @@
 
 
               <div class="version">
-                1.3.1
+                1.3.2
               </div>
 
 

diff --git a/docs/build/html/example.html b/docs/build/html/example.html
@@ -8,7 +8,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>Example reduction &mdash; IRDAP 1.3.1 documentation</title>
+  <title>Example reduction &mdash; IRDAP 1.3.2 documentation</title>
 
 
 
@@ -61,7 +61,7 @@
 
 
               <div class="version">
-                1.3.1
+                1.3.2
               </div>
 
 

diff --git a/docs/build/html/genindex.html b/docs/build/html/genindex.html
@@ -9,7 +9,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>Index &mdash; IRDAP 1.3.1 documentation</title>
+  <title>Index &mdash; IRDAP 1.3.2 documentation</title>
 
 
 
@@ -60,7 +60,7 @@
 
 
               <div class="version">
-                1.3.1
+                1.3.2
               </div>
 
 

diff --git a/docs/build/html/index.html b/docs/build/html/index.html
@@ -8,7 +8,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>IRDAP &mdash; IRDAP 1.3.1 documentation</title>
+  <title>IRDAP &mdash; IRDAP 1.3.2 documentation</title>
 
 
 
@@ -60,7 +60,7 @@
 
 
               <div class="version">
-                1.3.1
+                1.3.2
               </div>
 
 

diff --git a/docs/build/html/installation.html b/docs/build/html/installation.html
@@ -8,7 +8,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>Installation &mdash; IRDAP 1.3.1 documentation</title>
+  <title>Installation &mdash; IRDAP 1.3.2 documentation</title>
 
 
 
@@ -61,7 +61,7 @@
 
 
               <div class="version">
-                1.3.1
+                1.3.2
               </div>
 
 

diff --git a/docs/build/html/instructions.html b/docs/build/html/instructions.html
@@ -8,7 +8,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>Usage instructions &mdash; IRDAP 1.3.1 documentation</title>
+  <title>Usage instructions &mdash; IRDAP 1.3.2 documentation</title>
 
 
 
@@ -61,7 +61,7 @@
 
 
               <div class="version">
-                1.3.1
+                1.3.2
               </div>
 
 

diff --git a/docs/build/html/mailinglist.html b/docs/build/html/mailinglist.html
@@ -8,7 +8,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>Mailing list &mdash; IRDAP 1.3.1 documentation</title>
+  <title>Mailing list &mdash; IRDAP 1.3.2 documentation</title>
 
 
 
@@ -61,7 +61,7 @@
 
 
               <div class="version">
-                1.3.1
+                1.3.2
               </div>
 
 

diff --git a/docs/build/html/objects.inv b/docs/build/html/objects.inv
diff --git a/docs/build/html/search.html b/docs/build/html/search.html
@@ -8,7 +8,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>Search &mdash; IRDAP 1.3.1 documentation</title>
+  <title>Search &mdash; IRDAP 1.3.2 documentation</title>
 
 
 
@@ -59,7 +59,7 @@
 
 
               <div class="version">
-                1.3.1
+                1.3.2
               </div>
-Original file line number
+Diff line change
@@ Expand Up / @@ -8,7 +8,7 @@ @@
       <meta name="viewport" content="width=device-width, initial-scale=1.0">
-      <title>Acknowledgements &mdash; IRDAP 1.3.1 documentation</title>
+      <title>Acknowledgements &mdash; IRDAP 1.3.2 documentation</title>
@@ Expand Down Expand Up / @@ -60,7 +60,7 @@ @@
                   <div class="version">
-.3.1
+.3.2
                   </div>
@@ Expand Down @@