Use rOpenSci ROR link as per CRAN request #106
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| on: [push, pull_request] | |
| name: R-check | |
| jobs: | |
| R--check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - { os: windows-latest, r: 'release', args: "--no-manual"} | |
| - { os: macOS-latest, r: 'release', args: "--no-manual"} | |
| - { os: macOS-latest, r: 'devel', args: "--no-manual"} | |
| - { os: ubuntu-latest, r: 'release', args: "--no-manual"} | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| CRAN: ${{ matrix.config.rspm }} | |
| NOAA_KEY: ${{secrets.NOAA_KEY}} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-tinytex@v2 | |
| if: contains(matrix.config.args, 'no-manual') == false | |
| - name: Query dependencies | |
| run: | | |
| install.packages('remotes') | |
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | |
| writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | |
| shell: Rscript {0} | |
| - name: Cache R packages | |
| if: runner.os != 'Windows' | |
| uses: actions/cache@v2 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | |
| restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | |
| - name: install macOS system dependencies | |
| if: runner.os == 'macOS' | |
| continue-on-error: true | |
| run: | | |
| brew install pkg-config udunits proj geos gdal netcdf | |
| - name: Install system dependencies | |
| if: runner.os == 'Linux' | |
| run: | | |
| sudo add-apt-repository -y ppa:ubuntugis/ppa | |
| sudo apt-get -y update | |
| sudo apt-get install -y --no-install-recommends \ | |
| libudunits2-dev \ | |
| libproj-dev \ | |
| libgeos-dev \ | |
| libgdal-dev \ | |
| netcdf-bin | |
| - name: Install dependencies | |
| run: | | |
| Rscript -e "install.packages('remotes')" | |
| Rscript -e "remotes::install_deps(dependencies = TRUE)" | |
| Rscript -e "remotes::install_cran(c('rcmdcheck', 'rgdal', 'ncdf4', 'taxize', 'leaflet', 'purrr', 'ggmap', 'ropenaq', 'covr'))" | |
| - name: Session info | |
| run: | | |
| options(width = 100) | |
| pkgs <- installed.packages()[, "Package"] | |
| sessioninfo::session_info(pkgs, include_base = TRUE) | |
| shell: Rscript {0} | |
| - name: Check | |
| run: Rscript -e "rcmdcheck::rcmdcheck(args = c('--as-cran', '${{ matrix.config.args }}'), error_on = 'warning', check_dir = 'check')" | |
| - name: Show testthat output | |
| if: always() | |
| run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true | |
| shell: bash | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| path: check | |
| - name: Test coverage | |
| if: matrix.config.os == 'ubuntu-16.04' && matrix.config.r == 'release' | |
| run: | | |
| Rscript -e 'remotes::install_github("r-lib/covr@gh-actions")' | |
| Rscript -e 'covr::codecov(token = "${{secrets.CODECOV_TOKEN}}")' | |