v1.9.0 release candidate (#4105)

* Start v1.9.0 release candidate * Check-in revdep results * `yarn build` (GitHub Actions) * Sync package version (GitHub Actions) * `yarn build` (GitHub Actions) * ran revdepcheck on cloud. 2 errors reported. Both seem like false positives * Fix R CMD check note about Rd links targets missing package anchors --------- Co-authored-by: cpsievert <[email protected]> Co-authored-by: Barret Schloerke <[email protected]> Co-authored-by: schloerke <[email protected]>
rstudio · Jul 29, 2024 · 56ab530 · 56ab530
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: shiny
 Type: Package
 Title: Web Application Framework for R
-Version: 1.8.1.9001
+Version: 1.9.0
 Authors@R: c(
     person("Winston", "Chang", role = c("aut", "cre"), email = "[email protected]", comment = c(ORCID = "0000-0002-1576-2126")),
     person("Joe", "Cheng", role = "aut", email = "[email protected]"),

diff --git a/NEWS.md b/NEWS.md
@@ -1,4 +1,4 @@
-# shiny (development version)
+# shiny 1.9.0
 
 ## New busy indication feature
 

diff --git a/R/bootstrap.R b/R/bootstrap.R
@@ -172,9 +172,10 @@ setCurrentTheme <- function(theme) {
 
 #' Register a theme dependency
 #'
-#' This function registers a function that returns an [htmlDependency()] or list
-#' of such objects. If `session$setCurrentTheme()` is called, the function will
-#' be re-executed, and the resulting html dependency will be sent to the client.
+#' This function registers a function that returns an
+#' [htmltools::htmlDependency()] or list of such objects. If
+#' `session$setCurrentTheme()` is called, the function will be re-executed, and
+#' the resulting html dependency will be sent to the client.
 #'
 #' Note that `func` should **not** be an anonymous function, or a function which
 #' is defined within the calling function. This is so that,

diff --git a/R/reactives.R b/R/reactives.R
@@ -951,7 +951,10 @@ Observable <- R6Class(
 #' See the [Shiny tutorial](https://shiny.rstudio.com/tutorial/) for
 #' more information about reactive expressions.
 #'
-#' @param x For `is.reactive()`, an object to test. For `reactive()`, an expression. When passing in a [`quo()`]sure with `reactive()`, remember to use [`rlang::inject()`] to distinguish that you are passing in the content of your quosure, not the expression of the quosure.
+#' @param x For `is.reactive()`, an object to test. For `reactive()`, an
+#'   expression. When passing in a [`rlang::quo()`]sure with `reactive()`,
+#'   remember to use [`rlang::inject()`] to distinguish that you are passing in
+#'   the content of your quosure, not the expression of the quosure.
 #' @template param-env
 #' @templateVar x x
 #' @templateVar env env

diff --git a/R/utils-lang.R b/R/utils-lang.R
@@ -53,8 +53,8 @@ formalsAndBody <- function(x) {
 
 #' @describeIn createRenderFunction convert a quosure to a function.
 #' @param q Quosure of the expression `x`. When capturing expressions to create
-#'   your quosure, it is recommended to use [`enquo0()`] to not unquote the
-#'   object too early. See [`enquo0()`] for more details.
+#'   your quosure, it is recommended to use [`rlang::enquo0()`] to not unquote
+#'   the object too early. See [`rlang::enquo0()`] for more details.
 #' @inheritParams installExprFunction
 #' @export
 quoToFunction <- function(

diff --git a/inst/www/shared/busy-indicators/busy-indicators.css b/inst/www/shared/busy-indicators/busy-indicators.css
diff --git a/inst/www/shared/shiny-autoreload.js b/inst/www/shared/shiny-autoreload.js
diff --git a/inst/www/shared/shiny-showcase.css b/inst/www/shared/shiny-showcase.css
diff --git a/inst/www/shared/shiny-showcase.js b/inst/www/shared/shiny-showcase.js
diff --git a/inst/www/shared/shiny-testmode.js b/inst/www/shared/shiny-testmode.js
diff --git a/inst/www/shared/shiny.js b/inst/www/shared/shiny.js
@@ -1,4 +1,4 @@
-/*! shiny 1.8.1.9001 | (c) 2012-2024 RStudio, PBC. | License: GPL-3 | file LICENSE */
+/*! shiny 1.9.0 | (c) 2012-2024 RStudio, PBC. | License: GPL-3 | file LICENSE */
 "use strict";
 (function() {
   var __create = Object.create;
@@ -25084,7 +25084,7 @@
       _defineProperty23(this, "initializeInputs", void 0);
       _defineProperty23(this, "initializedPromise", void 0);
       _defineProperty23(this, "oncustommessage", void 0);
-      this.version = "1.8.1.9001";
+      this.version = "1.9.0";
       var _initInputBindings = initInputBindings(), inputBindings = _initInputBindings.inputBindings, fileInputBinding2 = _initInputBindings.fileInputBinding;
       var _initOutputBindings = initOutputBindings(), outputBindings = _initOutputBindings.outputBindings;
       setFileInputBinding(fileInputBinding2);

diff --git a/inst/www/shared/shiny.min.css b/inst/www/shared/shiny.min.css
diff --git a/inst/www/shared/shiny.min.js b/inst/www/shared/shiny.min.js
diff --git a/inst/www/shared/shiny.min.js.map b/inst/www/shared/shiny.min.js.map
diff --git a/man/createRenderFunction.Rd b/man/createRenderFunction.Rd
diff --git a/man/reactive.Rd b/man/reactive.Rd
diff --git a/man/registerThemeDependency.Rd b/man/registerThemeDependency.Rd
diff --git a/package.json b/package.json
@@ -3,7 +3,7 @@
   "homepage": "https://shiny.rstudio.com",
   "repository": "github:rstudio/shiny",
   "name": "@types/rstudio-shiny",
-  "version": "1.8.1-alpha.9001",
+  "version": "1.9.0",
   "license": "GPL-3.0-only",
   "main": "",
   "browser": "",

diff --git a/revdep/README.md b/revdep/README.md
@@ -1,25 +1,43 @@
 # Revdeps
 
-## Failed to check (18)
+## Failed to check (29)
 
-|package            |version |error |warning |note |
-|:------------------|:-------|:-----|:-------|:----|
-|bigPint            |?       |      |        |     |
-|bioCancer          |?       |      |        |     |
-|ctsem              |3.9.1   |1     |        |     |
-|diveR              |?       |      |        |     |
-|EBImage            |?       |      |        |     |
-|g3viz              |?       |      |        |     |
-|GeneNetworkBuilder |?       |      |        |     |
-|grandR             |?       |      |        |     |
-|InterCellar        |?       |      |        |     |
-|LACE               |?       |      |        |     |
-|loon.shiny         |?       |      |        |     |
-|MatrixQCvis        |?       |      |        |     |
-|modchart           |?       |      |        |     |
-|multilevelcoda     |1.2.3   |1     |        |     |
-|omicsViewer        |?       |      |        |     |
-|RQuantLib          |0.4.21  |1     |        |     |
-|rstanarm           |2.32.1  |1     |        |     |
-|Seurat             |?       |      |        |     |
+|package         |version |error |warning |note |
+|:---------------|:-------|:-----|:-------|:----|
+|alevinQC        |?       |      |        |     |
+|animalEKF       |1.2     |1     |        |     |
+|animaltracker   |?       |      |        |     |
+|antaresViz      |?       |      |        |     |
+|AovBay          |0.1.0   |1     |        |     |
+|bdclean         |?       |      |        |     |
+|chipPCR         |1.0-2   |1     |        |     |
+|ctsem           |3.10.0  |1     |        |     |
+|diveR           |?       |      |        |     |
+|DynNom          |5.1     |1     |        |     |
+|hydflood        |?       |      |        |     |
+|loon.shiny      |?       |      |        |     |
+|modchart        |?       |      |        |     |
+|MODIStsp        |?       |      |        |     |
+|protGear        |?       |      |        |     |
+|robmedExtra     |0.1.0   |1     |        |     |
+|RQuantLib       |0.4.23  |1     |        |     |
+|rstanarm        |2.32.1  |1     |        |     |
+|scPipe          |?       |      |        |     |
+|sen2r           |?       |      |        |     |
+|SensMap         |0.7     |1     |        |     |
+|Seurat          |5.1.0   |1     |        |     |
+|shinyTempSignal |0.0.8   |1     |        |     |
+|Signac          |1.13.0  |1     |        |     |
+|simplevis       |?       |      |        |     |
+|statsr          |0.3.0   |1     |        |     |
+|teachingApps    |?       |      |        |     |
+|tidyvpc         |1.5.1   |1     |        |     |
+|TVTB            |?       |      |        |     |
+
+## New problems (2)
+
+|package |version |error    |warning |note   |
+|:-------|:-------|:--------|:-------|:------|
+|[EgoCor](problems.md#egocor)|1.2.0   |1 __+1__ |        |-1     |
+|[mxfda](problems.md#mxfda)|0.2.1   |         |        |__+1__ |