isomiR_biogenesis

Environment

To run the code the following packages should be installed on your machine: NumPy, Pandas, skikit-learn, SciPy.

How to prepare miRBase and TCGA data

Run the following commands: cd scripts/prepare python3 parse_miRBase.py python3 extract_canonical_isomiRNA.py python3 agregate_fraction_table_by_TCGA.py