update cache clearing

sa501428 · Feb 13, 2022 · 2e503e8 · 2e503e8
1 parent 0b902c3
commit 2e503e8
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Showing 3 changed files with 7 additions and 2 deletions.
diff --git a/src/javastraw/StrawGlobals.java b/src/javastraw/StrawGlobals.java
@@ -25,7 +25,7 @@
 package javastraw;
 
 public class StrawGlobals {
-    public static final String versionNum = "2.09.01";
+    public static final String versionNum = "2.09.02";
     // min hic file version supported
     public static final int minVersion = 6;
     public static final int bufferSize = 2097152;

diff --git a/src/javastraw/reader/Dataset.java b/src/javastraw/reader/Dataset.java
@@ -72,8 +72,9 @@ public Dataset(DatasetReader reader) {
         normalizationTypes = new ArrayList<>();
     }
 
-    public void clearCache() {
+    public void clearCache(boolean onlyClearInter) {
         for (Matrix matrix : matrices.values()) {
+            if (onlyClearInter && matrix.isIntra()) continue;
             try {
                 matrix.clearCache();
             } catch (Exception e) {

diff --git a/src/javastraw/reader/Matrix.java b/src/javastraw/reader/Matrix.java
@@ -176,6 +176,10 @@ public boolean isNotIntra() {
         return chr1 != chr2;
     }
 
+    public boolean isIntra() {
+        return chr1 == chr2;
+    }
+
     public void clearCache() {
         for (MatrixZoomData mzd : bpZoomData) {
             try {