updated test with new deseq2 values #24
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| name: build | |
| on: | |
| push: | |
| branches: [ dev ] | |
| jobs: | |
| build-linux: | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: networkcommons | |
| environment-file: environment.yml | |
| - name: Install additional dependencies | |
| run: | | |
| pip install git+https://github.com/saezlab/corneto.git@dev . | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Test and add coverage | |
| run: | | |
| pytest --cov --disable-warnings networkcommons |