22 add documentation #42

	name: build

	on: pull_request

	jobs:
	build-linux:
	defaults:
	run:
	shell: bash -l {0}
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- uses: conda-incubator/setup-miniconda@v3
	with:
	activate-environment: networkcommons
	environment-file: environment.yml
	- name: Install additional dependencies
	run: \|
	pip install git+https://github.com/saezlab/corneto.git@dev
	- name: Install NetworkCommons
	run: \|
	pip install .
	- name: Lint with flake8
	run: \|
	# stop the build if there are Python syntax errors or undefined names
	flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
	# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
	flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
	- name: Test and add coverage
	run: \|
	pytest --cov --disable-warnings networkcommons
	- name: Upload coverage reports to Codecov
	run: \|
	curl -Os https://uploader.codecov.io/latest/linux/codecov
	chmod +x codecov
	./codecov -t ${{ secrets.CODECOV_TOKEN }}

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