Merge remote-tracking branch 'upstream/develop' into finite-field-alg…

…ebraic-closure-copy

.ci/write-dockerfile.sh

@@ -275,11 +275,11 @@ cat <<EOF
 FROM with-system-packages AS bootstrapped
 #:bootstrapping:
 RUN rm -rf /new /sage/.git
-$ADD Makefile VERSION.txt COPYING.txt condarc.yml README.md bootstrap bootstrap-conda configure.ac sage .homebrew-build-env tox.ini Pipfile.m4 .gitignore /new/
+$ADD Makefile VERSION.txt COPYING.txt condarc.yml README.md bootstrap configure.ac sage .homebrew-build-env tox.ini .gitignore /new/
 $ADD config/config.rpath /new/config/config.rpath
 $ADD src/doc/bootstrap /new/src/doc/bootstrap
 $ADD src/bin /new/src/bin
-$ADD src/Pipfile.m4 src/pyproject.toml src/requirements.txt.m4 src/setup.cfg.m4 src/VERSION.txt /new/src/
+$ADD src/pyproject.toml src/requirements.txt.m4 src/setup.cfg.m4 src/VERSION.txt /new/src/
 $ADD m4 /new/m4
 $ADD pkgs /new/pkgs
 $ADD build /new/build

.devcontainer/onCreate-conda.sh

@@ -6,7 +6,7 @@ conda config --env --add channels conda-forge
 conda config --env --set channel_priority strict
 conda update -y --all --override-channels -c conda-forge
 conda install mamba=1 -n base -y
-mamba env create -y --file environment-dev-3.11-linux.yml || mamba env update -y --file environment-dev-3.11-linux.yml
+mamba env create -y --file environment-3.11-linux.yml || mamba env update -y --file environment-3.11-linux.yml
 conda init bash
 
 # Build sage

.github/workflows/build.yml

@@ -589,6 +589,6 @@ jobs:
 
       - name: Upload coverage to codecov
         if: (success() || failure()) && steps.container.outcome == 'success'
-        uses: codecov/codecov-action@v4
+        uses: codecov/codecov-action@v5
         with:
           directory: .coverage/coverage-report

.github/workflows/changelog_trigger.yml

@@ -0,0 +1,23 @@
+name: Trigger Changelog Generation
+
+on:
+  release:
+    types: [published]
+
+jobs:
+  trigger-website-repo-workflow:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Trigger Generate Changelog Workflow in website repo
+        if: "!github.event.release.prerelease"
+        env:
+          GITHUB_PAT: ${{ secrets.WEBSITE_ACCESS_TOKEN }}
+          RELEASE_TAG: ${{ github.event.release.tag_name }}
+        run: |
+          curl -L \
+            -X POST \
+            -H "Accept: application/vnd.github+json" \
+            -H "Authorization: Bearer $GITHUB_PAT" \
+            -H "X-GitHub-Api-Version: 2022-11-28" \
+            https://api.github.com/repos/sagemath/website/actions/workflows/generate_changelog.yml/dispatches \
+            -d '{"ref":"master","inputs":{"release_tag":"'"$RELEASE_TAG"'"}}'

.github/workflows/ci-conda.yml

@@ -69,7 +69,7 @@ jobs:
           use-mamba: true
           channels: conda-forge
           channel-priority: true
-          activate-environment: sage
+          activate-environment: sage-dev
           environment-file: ${{ matrix.conda-env }}-${{ matrix.python }}-${{ startsWith(matrix.os, 'macos') && (startsWith(runner.arch, 'ARM') && 'macos' || 'macos-x86_64') || 'linux' }}.yml
 
       - name: Print Conda environment

.github/workflows/ci-linux.yml

@@ -50,6 +50,7 @@ jobs:
       tox_packages_factors: >-
         ["standard"]
       docker_push_repository: ghcr.io/${{ github.repository }}/
+      logs_artifact: false
 
   # All platforms. This duplicates the default platform, but why not,
   # it makes it more robust regarding random timeouts.

.github/workflows/ci-meson.yml

@@ -47,14 +47,14 @@ jobs:
           key: ${{ runner.os }}-meson-${{ matrix.python }}
 
       - name: Setup Conda environment
-        uses: conda-incubator/setup-miniconda@v2
+        uses: conda-incubator/setup-miniconda@v3
         with:
           python-version: ${{ matrix.python }}
           miniforge-version: latest
           use-mamba: true
           channels: conda-forge
           channel-priority: true
-          activate-environment: sage
+          activate-environment: sage-dev
           environment-file: environment-${{ matrix.python }}-${{ startsWith(matrix.os, 'macos') && (startsWith(runner.arch, 'ARM') && 'macos' || 'macos-x86_64') || 'linux' }}.yml
 
       - name: Print Conda environment

.github/workflows/doc-build.yml

@@ -154,6 +154,7 @@ jobs:
           git config --global user.email "[email protected]"
           git config --global user.name "Build documentation workflow"
           unzip doc.zip
+          rm doc.zip
           PR_NUMBER=""
           if [[ "$GITHUB_REF" =~ refs/pull/([0-9]+)/merge ]]; then
             PR_NUMBER="${BASH_REMATCH[1]}"
@@ -202,6 +203,10 @@ jobs:
         if: steps.docbuild.outcome == 'success'
         run: |
           set -ex
+          # Remove any existing html directory before copying a new one
+          if [ -d "doc/html" ]; then
+              rm -rf doc/html
+          fi
           # Simpler "docker cp --follow-link ... doc" does not work
           mkdir -p doc
           mkdir -p temp
@@ -217,7 +222,7 @@ jobs:
           fi
           # If so, then create CHANGES.html
           if [[ -n "$PR_NUMBER" ]]; then
-            (cd doc && git commit -a -m 'new')
+            (cd doc && git add -A && git commit --quiet -m 'new')
             # Wipe out chronic diffs of new doc against old doc before creating CHANGES.html
             (cd doc && \
              find . -name "*.html" | xargs sed -i -e '/This is documentation/ s/ built with GitHub PR .* for development/ for development/' \
@@ -229,7 +234,7 @@ jobs:
             # Since HEAD is at commit 'wipe-out', HEAD~1 is commit 'new' (new doc), HEAD~2 is commit 'old' (old doc)
             (cd doc && git diff $(git rev-parse HEAD~2) -- "*.html") > diff.txt
             # Restore the new doc dropping changes by "wipe out"
-            (cd doc && git checkout -q -f HEAD~1)
+            (cd doc && git checkout --quiet -f HEAD~1)
             .ci/create-changes-html.sh diff.txt doc
             # Sometimes rm -rf .git errors out because of some diehard hidden files
             # So we simply move it out of the doc directory

.github/workflows/docker.yml

@@ -85,6 +85,9 @@ on:
         description: 'Elapsed time (seconds) at which to kill the build'
         default: 20000
         type: number
+      logs_artifact:
+        default: true
+        type: boolean
       #
       # Publishing to GitHub Packages
       #
@@ -260,11 +263,12 @@ jobs:
           cp -r .tox/$TOX_ENV/* "artifacts/$LOGS_ARTIFACT_NAME"
           rm -rf "artifacts/$LOGS_ARTIFACT_NAME"/{bin,lib,pyvenv.cfg}
         if: always()
-      - uses: actions/upload-artifact@v4
+      - name: Upload logs artifact
+        uses: actions/upload-artifact@v4
         with:
           path: artifacts
           name: ${{ env.LOGS_ARTIFACT_NAME }}
-        if: always()
+        if: always() && inputs.logs_artifact
       - name: Print out logs for immediate inspection
         # and markup the output with GitHub Actions logging commands
         run: |

.gitignore

@@ -27,8 +27,8 @@
 # no longer generated, but may still be in user worktrees
 /src/lib/pkgconfig
 
-# Environment files generated by bootstrap-conda.
-# The files without Python version and in src are no longer generated
+# Conda environment files
+# The files without Python version, with -dev or in src are no longer generated
 # but may still be in users' directories.
 /environment.yml
 /environment-3.9.yml
@@ -56,10 +56,6 @@
 
 /src/setup.cfg
 /src/requirements.txt
-/src/Pipfile
-/src/Pipfile.lock
-/Pipfile
-/Pipfile.lock
 
 # Various editors
 *~

.gitpod.yml

@@ -7,7 +7,7 @@ tasks:
   - name: Setup
     # Create conda environment, then configure and build sage
     init: >-
-      && mamba env create --file environment-dev-3.11-linux.yml --prefix venv
+      && mamba env create --file environment-3.11-linux.yml --prefix venv
       && conda config --append envs_dirs $(pwd)
       && conda activate $(pwd)/venv
       && ./bootstrap

.upstream.d/20-github.com-sagemath-sage-releases

@@ -1,5 +1,5 @@
 # Upstream packages as uploaded as GitHub release assets.
 # This file is automatically updated by the sage-update-version script.
+https://github.com/sagemath/sage/releases/download/10.6/
 https://github.com/sagemath/sage/releases/download/10.5/
 https://github.com/sagemath/sage/releases/download/10.4/
-https://github.com/sagemath/sage/releases/download/10.3/

.vscode/settings.json

@@ -24,10 +24,90 @@
     ],
     "python.testing.unittestEnabled": false,
     "cSpell.words": [
-        "furo",
+        "adic",
+        "arccos",
+        "arccosh",
+        "arcsin",
+        "arcsinh",
+        "arctan",
+        "arctanh",
+        "Bejger",
+        "bigcup",
+        "cachefunc",
+        "charpoly",
+        "classmethod",
+        "clopen",
+        "codim",
+        "codomain",
+        "coframe",
+        "coframes",
         "Conda",
+        "cputime",
+        "cysignals",
+        "Cython",
+        "d'Alembertian",
+        "dalembertian",
+        "disp",
+        "doctest",
+        "doctests",
+        "emptyset",
+        "figsize",
+        "Florentin",
+        "fontsize",
+        "forall",
+        "furo",
+        "Gourgoulhon",
+        "grayskull",
+        "groebner",
+        "homeomorphic",
+        "homset",
+        "homsets",
+        "hypersurfaces",
+        "infty",
+        "Jaffredo",
+        "Katsura",
+        "Koeppe",
+        "longmapsto",
+        "longrightarrow",
+        "mapsto",
+        "mathbb",
+        "mathrm",
+        "Michal",
+        "micjung",
+        "Minkowski",
+        "Möbius",
+        "mpfr",
+        "nabla",
+        "Nullspace",
+        "padics",
+        "pari",
+        "prandom",
+        "Pynac",
+        "rightarrow",
         "sagemath",
-        "Cython"
+        "scalarfield",
+        "SEEALSO",
+        "setminus",
+        "smithform",
+        "subchart",
+        "subcharts",
+        "subframe",
+        "subframes",
+        "subobjects",
+        "subring",
+        "superchart",
+        "supercharts",
+        "supersets",
+        "sympy",
+        "tensorfield",
+        "trigsimp",
+        "varphi",
+        "vbundle",
+        "vecmat",
+        "vectorfield",
+        "walltime",
+        "zmax",
+        "zmin"
     ],
     "editor.formatOnType": true,
     "esbonio.sphinx.confDir": ""

CITATION.cff

@@ -4,8 +4,8 @@ title: SageMath
 abstract: SageMath is a free open-source mathematics software system.
 authors:
 - name: "The SageMath Developers"
-version: 10.5.rc0
+version: 10.6.beta2
 doi: 10.5281/zenodo.8042260
-date-released: 2024-11-16
+date-released: 2024-12-22
 repository-code: "https://github.com/sagemath/sage"
 url: "https://www.sagemath.org/"

Makefile

@@ -174,8 +174,7 @@ bootstrap-clean:
 	rm -rf config/install-sh config/compile config/config.guess config/config.sub config/missing configure build/make/Makefile-auto.in
 	rm -f src/doc/en/installation/*.txt
 	find src/doc/en/reference/spkg -name index.rst -prune -o -maxdepth 1 -name "*.rst" -exec rm -f {} \+
-	for a in environment environment-optional src/environment src/environment-dev src/environment-optional; do rm -f $$a.yml $$a-3.[89].yml $$a-3.1[0-9].yml; done
-	rm -f src/Pipfile
+	for a in environment environment-optional src/environment src/environment-optional; do rm -f $$a.yml $$a-3.[89].yml $$a-3.1[0-9].yml; done
 	rm -f src/requirements.txt
 	rm -f src/setup.cfg
 	rm -f build/pkgs/cypari/version_requirements.txt