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init commit for crosslinking-MS data quality
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,92 @@ | ||
| {% if enable_cx %} | ||
| <div class="card-body border-success" style="border-color: solid black;"> | ||
| <!-- start overall card body for front page --> | ||
| <div class="card-header" style="background-color: #FFF;"> | ||
| <!-- Data quality header --> | ||
| <div class="row"> | ||
| <div class="col-lg-12"> | ||
| <h5 class= ex2 align= center> | ||
| <u><a name=crosslinking-ms>Crosslinking-MS</a></u> | ||
| </h5> | ||
| <p align=justify> | ||
| <em>At the moment, data validation is only available for crosslinking-MS datasets deposited in a standardized mzIdentML format to PRIDE</em>. | ||
| </p> | ||
| {% if cx_data_quality|length > 0 %} | ||
| {% for data in cx_data_quality %} | ||
| <div name=crosslinking-ms-{{ data["pride_id"] }} {{ 'class="card-header" style="background-color: #FFF;"' if cx_data_quality|length > 1 }}> | ||
| <table vertical-align: middle;"> | ||
| <tr> | ||
| <td>Crosslinking-MS dataset (<a href=https://www.ebi.ac.uk/pride/>PRIDE ID</a>)</td> | ||
| <td><a href=https://www.ebi.ac.uk/pride/archive/crosslinking/{{ data["pride_id"] }}>{{ data["pride_id"] }}</a></td> | ||
| </tr> | ||
| <tr> | ||
| <td>Number of entities in the crosslinking-MS dataset:</td> | ||
| <td>{{ data['entities_ms'] }}</td> | ||
| </tr> | ||
| <tr> | ||
| <td>Number of entities in the entry:</td> | ||
| <td>{{ data['entities'] }}</td> | ||
| </tr> | ||
| <tr> | ||
| <td colspan="2">Matching entities:</td> | ||
| </tr> | ||
| <tr> | ||
| <td colspan="2"> | ||
| <div> | ||
| <table class='table table-bordered' style='border-color:#003366;'> | ||
| <tr> | ||
| <td>Entity ID</td> | ||
| <td>Crosslinking-MS Entity ID</td> | ||
| <td>E-value</td> | ||
| <td>Exact_match</td> | ||
| </tr> | ||
| {% for match in data['matches'] %} | ||
| <tr> | ||
| <td>{{ match['entity'] }}</td> | ||
| <td>{{ match['entity_ms'] }}</td> | ||
| <td>{{ match['e-value'] }}</td> | ||
| <td>{{ match['exact_match'] }}</td> | ||
| </tr> | ||
| {% endfor %} | ||
| </table> | ||
| </div> | ||
| </td> | ||
| </tr> | ||
| <tr> | ||
| <td colspan="2">Residue pairs stats:</td> | ||
| </tr> | ||
| <tr> | ||
| <td colspan="2"> | ||
| <div> | ||
| <table class='table table-bordered' style='border-color:#003366;'> | ||
| <tr> | ||
| <td>Source</td> | ||
| <td>Total</td> | ||
| <td>In matched entities</td> | ||
| <td>Total matched</td> | ||
| </tr> | ||
| <tr> | ||
| <td>Crosslinking-MS dataset</td> | ||
| <td>{{ data['stats']['ms']['total'] }}</td> | ||
| <td>{{ data['stats']['ms']['mapped_entities'] }} ({{ "%.2f"|format(data['stats']['ms']['mapped_entities_pct']) }}%)</td> | ||
| <td>{{ data['stats']['ms']['matched'] }} ({{ "%.2f"|format(data['stats']['ms']['matched_pct']) }}% )</td> | ||
| </tr> | ||
| <tr> | ||
| <td>Entry</td> | ||
| <td>{{ data['stats']['entry']['total'] }}</td> | ||
| <td>{{ data['stats']['entry']['mapped_entities'] }} ({{ "%.2f"|format(data['stats']['entry']['mapped_entities_pct']) }}%)</td> | ||
| <td>{{ data['stats']['entry']['matched'] }} ({{ "%.2f"|format(data['stats']['entry']['matched_pct']) }}%)</td> | ||
| </tr> | ||
| </table> | ||
| </div> | ||
| </td> | ||
| </tr> | ||
| </table> | ||
| </div> | ||
| {% endfor %} | ||
| {% endif %} | ||
| </div> | ||
| </div> | ||
| </div> | ||
| </div> | ||
| {% endif %} |