fix vignette errors

samuel-marsh · Dec 5, 2024 · 0255683 · 0255683
1 parent f200499
commit 0255683
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/vignettes/articles/LIGER_Functions.Rmd b/vignettes/articles/LIGER_Functions.Rmd
@@ -261,14 +261,14 @@ By default this will query all datasets in the object to create unified gene lis
 ```{r}
 gene_input_list <- c("P2ry12", "Fcrls", "Aif1")
 
-genes_present <- Feature_Present(data = marsh_liger, gene_list = gene_input_list)
+genes_present <- Feature_Present(data = marsh_liger, features = gene_input_list)
 ```
 
 However you can check individual datasets within object by supplying those matrices to the `data` parameter.
 ```{r}
 gene_input_list <- c("P2ry12", "Fcrls", "Aif1")
 
-genes_present <- Feature_Present(data = marsh_liger@raw.data[[1]], gene_list = gene_input_list)
+genes_present <- Feature_Present(data = marsh_liger@datasets[[1]], features = gene_input_list)
 ```
 
 
diff --git a/vignettes/articles/Object_Conversion.Rmd b/vignettes/articles/Object_Conversion.Rmd
@@ -59,7 +59,7 @@ Load Seurat Object & Add QC Data
 pbmc <- pbmc3k.SeuratData::pbmc3k.final
 pbmc <- UpdateSeuratObject(pbmc)
 
-pbmc <- Add_Cell_QC_Metrics(seurat_object = pbmc, species = "human")
+pbmc <- Add_Cell_QC_Metrics(object = pbmc, species = "human")
 ```
 
 We'll also add some random meta data variables to pbmc data form use in this vignette