Skip to content

Issues: sanger-pathogens/ariba

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

44 Open 81 Closed
44 Open 81 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

can ariba be run with one seq file and not 2
#346 opened Nov 21, 2024 by Julian-marchesi
Error in generating PubMLST database with ariba pubmlstget: Missing gene-specific .tfa files
#344 opened Nov 8, 2024 by jimmlucas
Resfinder -- interpretation
#343 opened Oct 15, 2024 by ZainBioBytes
There is not detailed_serogroup_info
#342 opened Aug 12, 2024 by juanjo255
Bowtie2 ERROR
#341 opened Aug 8, 2024 by Mx-Chpl
Change "pubmlstspecies" source url
#340 opened Oct 24, 2023 by Nilad
Test run seems to not work properly
#338 opened Jun 22, 2023 by marcellobeltrami
2
How to determine SNP frequency in multi-copy genes (e.g., 23S rRNA).
#337 opened Jun 13, 2023 by slvrshot
2
Long read compatibility by tweaking the pipeline
#332 opened Feb 14, 2023 by varun8476
1
VFDB contains few genes that are not part of any cluster
#331 opened Feb 10, 2023 by PovilasMat
2
Failed cluster: cluster
#330 opened Jan 30, 2023 by Iqrarshad
1
Filter Bad MLST Profiles from PubMLST
#328 opened Aug 18, 2022 by Nilad
problems with resfinder and vfdb
#325 opened May 30, 2022 by fedeserral
2
Bug when dealing with insertions and deletions in assemblies
#324 opened May 25, 2022 by pirale
input data
#323 opened Mar 15, 2022 by daoerxianqiao
A cluster failed !! Any help would be great
#322 opened Mar 1, 2022 by MariaPerezVazquez
1
Incompatible Biopython version in Ariba Docker image
#317 opened Nov 7, 2021 by KuangXY3
1
NCBI Data Download Error
#316 opened Jul 11, 2021 by hackerzone85
1
NCBI Database Download Error
#313 opened Mar 15, 2021 by EmmaMills101
4
Conda package support for Python 3.7+
#312 opened Jan 28, 2021 by zmunro
4
Support for downloading cgMLST schemes?
#311 opened Dec 24, 2020 by slvrshot
1
ARIBA error in Galaxy
#309 opened Oct 13, 2020 by ajkarloss
Unable to download Escherichia coli#1 and Escherichia coli#2
#308 opened Oct 7, 2020 by RotimiDada
2
Biopython 1.78 not compatible because of Alphabet missing
#307 opened Sep 30, 2020 by besnarda
3
ariba.clusters.Error: At least one cluster failed
#306 opened Sep 18, 2020 by JFsanchezherrero
ProTip! Add no:assignee to see everything that’s not assigned.