Automatic inference of neighboring cells based on their Delaunay triangulation.
For more information, take a look at our publication:
Moretti, B., Rodriguez Alvarez, S.N. & Grecco, H.E. Nfinder: automatic inference of cell neighborhood in 2D and 3D using nuclear markers. BMC Bioinformatics 24, 230 (2023). https://doi.org/10.1186/s12859-023-05284-2
nfinder was tested with:
- python = 3.8.5
- napari = 0.4.12
- numpy = 1.21.2
- pandas = 1.3.4
- scikit-image = 0.18.3
- scipy = 1.7.1
It can be installed with pip from PyPI:
pip install nfinder
For usage examples, please check out the notebook in our GitHub repository.