GOLEM (Gene regulatOry eLEMents) enables users to precisely locate any motif of interest with respect to TSS or ATG within the relevant plant genomes across the plant Tree of Life (Marchantia, Physcomitrium, Amborella, Oryza, Zea, Solanum and Arabidopsis). The visualisation of the motifs is performed with respect to the transcript levels of particular genes in leaves and male reproductive tissues, and can be compared with genome-wide distribution regardless of the transcription level
This repository contains the GOLEM data pipeline and the GOLEM UI.
Hosted version of GOLEM can be found at golem.ncbr.muni.cz
The project consists of two parts:
If you have any questions regarding GOLEM, please contact Petra Procházková Schrumpfová.