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schneebergerlab

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  1. syri syri Public

    Synteny and Rearrangement Identifier

    Cython 364 38

  2. plotsr plotsr Public

    Tool to plot synteny and structural rearrangements between genomes

    Python 298 29

  3. AMPRIL-genomes AMPRIL-genomes Public

    scripts for the project of seven thaliana genomes assembly

    Python 38 18

  4. findGSE findGSE Public

    findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a skew normal distribution model.

    R 37 10

  5. fixchr fixchr Public

    Python 15 1

  6. GameteBinning GameteBinning Public

    C++ 12 3

Repositories

Showing 10 of 22 repositories
  • pantohap Public
    schneebergerlab/pantohap’s past year of commit activity
    Python 0 0 0 0 Updated Feb 27, 2025
  • syri Public

    Synteny and Rearrangement Identifier

    schneebergerlab/syri’s past year of commit activity
    Cython 364 MIT 38 22 2 Updated Feb 24, 2025
  • plotsr Public

    Tool to plot synteny and structural rearrangements between genomes

    schneebergerlab/plotsr’s past year of commit activity
    Python 298 MIT 29 8 1 Updated Feb 14, 2025
  • msyd Public
    schneebergerlab/msyd’s past year of commit activity
    Python 9 MIT 0 9 0 Updated Dec 19, 2024
  • fixchr Public
    schneebergerlab/fixchr’s past year of commit activity
    Python 15 MIT 1 3 0 Updated Nov 21, 2024
  • haplotype_threading Public

    Here are the scripts for pan-genome based haplotype threading with short reads (by Craig Dent)

    schneebergerlab/haplotype_threading’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Aug 30, 2024
  • apricot_layer_mutations Public
    schneebergerlab/apricot_layer_mutations’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Aug 29, 2024
  • snrna_eqtl_mapping Public

    Pipeline for processing 10X snRNAseq data to map eQTLs in recombinant gametes

    schneebergerlab/snrna_eqtl_mapping’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Aug 2, 2024
  • chromodo Public

    Toolbox for genome assemblies and chromosomes

    schneebergerlab/chromodo’s past year of commit activity
    0 MIT 0 0 0 Updated May 17, 2024
  • findGSE Public

    findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a skew normal distribution model.

    schneebergerlab/findGSE’s past year of commit activity
    R 37 10 3 0 Updated Jan 16, 2024
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