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pansyn.find_multisyn(syns, alns, only_core=True)
Traceback (most recent call last):
File "/srv/netscratch/dep_mercier/grp_schneeberger/software/anaconda3_2021/envs/mgpy3.8/lib/python3.8/site-packages/IPython/core/interactiveshell.py", line 3398, in run_code
exec(code_obj, self.user_global_ns, self.user_ns)
File "<ipython-input-15-4c7dca4baca4>", line 1, in <cell line: 1>
pansyn.find_multisyn(syns, alns, only_core=True)
File "pansyri/pyxfiles/pansyn.pyx", line 262, in pansyri.pansyn.find_multisyn
File "pansyri/pyxfiles/pansyn.pyx", line 132, in pansyri.pansyn.find_overlaps
File "pansyri/pyxfiles/util.pyx", line 85, in pansyri.util.get_orgs_from_df
TypeError: reduce() of empty sequence with no initial value
Pansyri should check that the input table:
Have same reference
The files are indeed alignment and syri output files
If the input file is incorrect then it should throw an informative error.
The text was updated successfully, but these errors were encountered:
I provided the following incorrect table as input:
which resulted in the following error:
Pansyri should check that the input table:
If the input file is incorrect then it should throw an informative error.
The text was updated successfully, but these errors were encountered: