syri stopped running for unknown reasons

[gaochenx]

When I run syri to identify structural variations in sam files, syri will keep running, but there is no program in the background.

This is my command line：
syri -c Zm_Ki11_mo17.sort.bam -r ./Zm-Mo17.chr4.fa -q ./Zm_Ki11.chr4.fa -k -F B --prefix Zm_Ki11_mo17 --nc 12

This is the log file：
2024-08-23 14:44:26,071 - Reading Coords - INFO - syri:134 - Reading input from BAM file
2024-08-23 14:50:22,439 - Reading Coords - INFO - syri:134 - Filtering alignments
2024-08-23 14:50:26,062 - syri - INFO - syri:213 - starting
2024-08-23 14:50:26,079 - syri - INFO - syri:213 - Analysing chromosomes: ['chr4']
2024-08-23 14:50:26,213 - syri.chr4 - INFO - mapstar:48 - chr4 (14883, 11)
2024-08-23 14:50:26,213 - syri.chr4 - INFO - mapstar:48 - Identifying Synteny for chromosome chr4
2024-08-23 14:51:06,975 - syri.chr4 - INFO - mapstar:48 - Identifying Inversions for chromosome chr4

I don't know what's going on, this will keep running, but the program has crashed.

I can confirm that there is no problem with my syri, because half of the tasks have been running normally and the corresponding results have been output

[gaochenx]

Why is syri stuck in last step and using more than 70% memory of server? #118
The situation is somewhat similar to question 118. Mine will just crash, not take up a lot of memory. But the program is still running in the foreground, and the background no longer shows the program

[mnshgl0110]

Are these maize genomes? For highly repetitive, sometimes the alignments configuration could result in this. Using a smaller value for the --invgaplen should solve this issue.