The number of translocations in the summary file is different from that in the output file

[Clark1016]

Hello,

I found some problems when exploring translocation, the number of translocations in the summary file is 538.

#Structural annotations
#Variation_type Count   Length_ref      Length_qry
Syntenic regions        322     266193665       266149557
Inversions      101     42445164        44456263
Translocations  538     4797432 4850134
Duplications (reference)        262     2147665 -
Duplications (query)    677     -       2188434
Not aligned (reference) 1058    59095529        -
Not aligned (query)     1448    -       65775818


#Sequence annotations
#Variation_type Count   Length_ref      Length_qry
SNPs    358050  358050  358050
Insertions      76790   -       7144941
Deletions       103976  6705408 -
Copygains       36      -       170322
Copylosses      29      69341   -
Highly diverged 1983    51651295        53132934
Tandem repeats  4       1449    1628

However, there are only 255 translocations filtered out based on column 11 in the output file.

awk '$11 == "TRANS"' syri.out | less -S| wc -l
255

[mnshgl0110]

Translocations in the summary file also includes inverted translocations (INVTR).