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For beluga scilpy2 #242

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merged 6 commits into from
May 17, 2024
Merged

For beluga scilpy2 #242

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4e83254
Update to scilpy 2.0
EmmaRenauld Apr 25, 2024
d7711a1
Use new data fetcher management
EmmaRenauld Apr 25, 2024
2509a8c
Upgrade torch
EmmaRenauld Apr 25, 2024
06da2b9
Update requirements
EmmaRenauld Feb 13, 2024
1e4860b
Add beluga's module information
EmmaRenauld Apr 25, 2024
b84da8c
Merge branch 'master' into for_beluga_scilpy2
EmmaRenauld May 17, 2024
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17 changes: 11 additions & 6 deletions requirements.txt
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Original file line number Diff line number Diff line change
@@ -1,5 +1,8 @@
# Supported for python 3.10
# Should work for python > 3.8.

# For beluga: don't forget to run this in an environment with:
# module load StdEnv/2023
# module load python/3.10.13 rust/1.70.0
# module load scipy-stack/2023b

# -------
# Main dependency: scilpy
Expand All @@ -8,7 +11,9 @@
# -------
requests==2.28.*
dipy==1.9.*
scilpy==2.0.2
# scilpy==2.0.2 ---> Replaced by modified version for beluga while waiting for
# the appropriate wheel to be added to Beluga.
-e git+https://github.com/EmmaRenauld/scilpy@for_beluga_scilpy2#egg=scilpy

# -------
# Other important dependencies
Expand All @@ -28,11 +33,11 @@ pynvml>=11.5.0
# Necessary but should be installed with scilpy (Last check: 04/2024):
# -------
future==0.18.*
h5py==3.7.* # h5py must absolutely be >2.4: that's when it became thread-safe
h5py==3.10.* # h5py must absolutely be >2.4: that's when it became thread-safe
matplotlib==3.6.* # Hint: If matplotlib fails, you may try to install pyQt5.
nibabel==5.2.*
numpy==1.23.*
scipy==1.9.*
numpy==1.25.*
scipy==1.11.*
scikit-image==0.22.*


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