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1. KrishnaswamyLab/PHATE KrishnaswamyLab/PHATE Public

   PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.

   Python 477 75

2. KrishnaswamyLab/MAGIC KrishnaswamyLab/MAGIC Public

   MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.

   Jupyter Notebook 347 96

3. KrishnaswamyLab/graphtools KrishnaswamyLab/graphtools Public

   Tools for building and manipulating graphs in Python

   Python 41 15

4. KrishnaswamyLab/scprep KrishnaswamyLab/scprep Public

   A collection of scripts and tools for loading, processing, and handling single cell data.

   Python 72 20

5. m-phate m-phate Public

   Multislice PHATE for tensor embeddings

   Python 59 8

6. picopore picopore Public

   A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information

   Python 31 5