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Fix: distributed sampler for multi GPU #1534

Fix: distributed sampler for multi GPU

Fix: distributed sampler for multi GPU #1534

name: test (resolution)
on:
pull_request:
branches: [main, "[0-9]+.[0-9]+.x"]
types: [labeled, synchronize, opened]
schedule:
- cron: "0 10 * * *" # runs at 10:00 UTC (03:00 PST) every day
workflow_dispatch:
concurrency:
group: ${{ github.workflow }}-${{ github.ref }}
cancel-in-progress: true
jobs:
test:
# if PR has label "resolution tests" or "all tests" or if scheduled or manually triggered
if: >-
(
contains(github.event.pull_request.labels.*.name, 'resolution tests') ||
contains(github.event.pull_request.labels.*.name, 'all tests') ||
contains(github.event_name, 'schedule') ||
contains(github.event_name, 'workflow_dispatch')
)
runs-on: ${{ matrix.os }}
defaults:
run:
shell: bash -e {0} # -e to fail on error
strategy:
fail-fast: false
matrix:
os: [ubuntu-latest]
python: ["3.10", "3.11", "3.12"]
install-flags: ["--prerelease if-necessary-or-explicit"]
name: integration
env:
OS: ${{ matrix.os }}
PYTHON: ${{ matrix.python }}
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python }}
cache: "pip"
cache-dependency-path: "**/pyproject.toml"
- name: Install dependencies
run: |
python -m pip install --upgrade pip wheel uv
python -m uv pip install ${{ matrix.install-flags }} --system "scvi-tools[tests] @ ."
- name: Run pytest
env:
MPLBACKEND: agg
PLATFORM: ${{ matrix.os }}
DISPLAY: :42
COLUMNS: 120
run: |
coverage run -m pytest -v --color=yes
coverage report
- uses: codecov/codecov-action@v4
with:
token: ${{ secrets.CODECOV_TOKEN }}