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release: Updates for scvi-tools v1.2.1 (#3069)
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ori-kron-wis authored Dec 4, 2024
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7 changes: 3 additions & 4 deletions CHANGELOG.md
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- Add {class}`scvi.external.Decipher` for dimensionality reduction and interpretable
representation learning in single-cell RNA sequencing data {pr}`3015`.

### 1.2.1 (2024-XX-XX)
### 1.2.1 (2024-12-04)

#### Added

- Added adaptive handling for last training minibatch of 1-2 cells in case of
`datasplitter_kwargs={"drop_last": False}` and `train_size = None` by moving them into
validation set, if available. {pr}`3036`.
- Add `batch_key` and `labels_key` to `scvi.external.SCAR.setup_anndata`.
- Add `batch_key` and `labels_key` to `scvi.external.SCAR.setup_anndata`. {pr}`3045`.
- Implemented variance of ZINB distribution. {pr}`3044`.
- Support for minified mode while retaining counts to skip the encoder.
- New Trainingplan argument `update_only_decoder` to use stored latent codes and skip training of
the encoder.
- Refactored code for minified models.
- Refactored code for minified models. {pr}`2883`.
- Add {class}`scvi.external.METHYLVI` for modeling methylation data from single-cell
bisulfite sequencing (scBS-seq) experiments {pr}`2834`.

Expand All @@ -42,7 +42,6 @@ to [Semantic Versioning]. Full commit history is available in the
aggregated posterior log-density {pr}`3007`.
- Fix references to `scvi.external` in `scvi.external.SCAR.setup_anndata`.
- Fix gimVI to append mini batches first into CPU during get_imputed and get_latent operations {pr}`3058`.
-

#### Changed

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2 changes: 1 addition & 1 deletion pyproject.toml
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[project]
name = "scvi-tools"
version = "1.2.0"
version = "1.2.1"
description = "Deep probabilistic analysis of single-cell omics data."
readme = "README.md"
requires-python = ">=3.10"
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