fix(minio): add env variables for auth

deploy/docker-compose.yml

@@ -1,37 +1,46 @@
 version: '2'
+
+volumes:
+  minio-data:
+    driver: local
+
+networks:
+  modo-network:
+    driver: bridge
+
 services:
 
   minio:
     image: docker.io/bitnami/minio:2024
     ports:
-      - '8080:8080'
-      - '8081:8081'
+      - '9000:9000' # api
+      - '9001:9001' # console
     volumes:
-      - minio-data:/bitnami/minio/data
+      - /data/s3:/bitnami/minio/data
     networks:
       - modo-network
+    environment:
+      - MINIO_ROOT_USER=minio
+      - MINIO_ROOT_PASSWORD=miniosecret
+      - MINIO_DEFAULT_BUCKETS=modo-bucket:readwrite
 
   htsget:
     image: ghcr.io/umccr/htsget-rs:dev-latest
     networks:
       - modo-network
-    volumes:
-      - minio-data:/data/s3
+    environment:
+      - S3_ENDPOINT=minio:9000
+      - MINIO_SERVER_ACCESS_KEY=user
+      - MINIO_SERVER_SECRET_KEY=pass
 
   modo-server:
     build: ./modo-server
     ports:
       - '8000:8000'
-      - '9000:9000'
     networks:
       - modo-network
+    environment:
+      - S3_ENDPOINT=minio:8080
     volumes:
       - minio-data:/data/s3
     command: uvicorn --host 0.0.0.0 --port 8000 --reload server:app
-
-volumes:
-  minio-data:
-    driver: local
-
-networks:
-  modo-network:

deploy/modo-server/server.py

@@ -1,16 +1,24 @@
+import os
 from typing import Union
 
 from fastapi import FastAPI
+import modo
 from modo.api import MODO
 import rdflib
 
 
-S3_BUCKET = "s3://foo/bar"
-
+S3 = os.environ["S3_ENDPOINT"]
 
 app = FastAPI()
 
 
+@app.get("/")
+def index():
+    return {
+        "S3 endpoint": f"{S3}",
+    }
+
+
 def gather_metadata() -> rdflib.Graph:
     """Generate metadata KG from all MODOs."""
     # Loop on MODOs
@@ -19,11 +27,6 @@ def gather_metadata() -> rdflib.Graph:
     # Graph union
 
 
-@app.get("/")
-def read_root():
-    return {"Hello": "World"}
-
-
 @app.get("/items/{item_id}")
 def read_item(item_id: int, q: Union[str, None] = None):
     return {"item_id": item_id, "q": q}