test: update reference path

sdsc-ordes · Oct 21, 2024 · f1440f3 · f1440f3
1 parent b9cedd8
commit f1440f3
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Showing 2 changed files with 4 additions and 5 deletions.
diff --git a/modos/api.py b/modos/api.py
@@ -86,10 +86,9 @@ class MODO:
     ['sample/sample1']
 
     # List files in the archive
-    >>> files = sorted(demo.list_files())
-    >>> assert Path('data/ex/demo1.cram') in files
-    >>> assert Path('data/ex/reference1.fa') in files
-
+    >>> files = [str(x) for x in demo.list_files()]
+    >>> assert 'data/ex/demo1.cram' in files
+    >>> assert 'data/ex/reference.fa' in files
     """
 
     def __init__(

diff --git a/tests/test_api_local.py b/tests/test_api_local.py
@@ -124,7 +124,7 @@ def test_stream_genomics_region(test_modo):
     seq = test_modo.stream_genomics(
         file_path=file_path[0],
         region="BA000007.3",
-        reference_filename="data/ex/reference1.fa",
+        reference_filename="data/ex/reference.fa",
     )
     assert isinstance(seq, Iterator)
     assert isinstance(next(seq), pysam.AlignedSegment)