refactor: smoc-schema -> modo-schema (#8)

* refactor: smoc->modo

* chore: regen

* refactor(prefix): modo -> modos

* chore: regen

CONTRIBUTING.md

@@ -1,9 +1,9 @@
-# Contributing to smoc-schema
+# Contributing to modo-schema
 
 :+1: First of all: Thank you for taking the time to contribute!
 
 The following is a set of guidelines for contributing to
-smoc-schema. These guidelines are not strict rules.
+modo-schema. These guidelines are not strict rules.
 Use your best judgment, and feel free to propose changes to this document
 in a pull request.
 
@@ -22,7 +22,7 @@ in a pull request.
 
 ## Code of Conduct
 
-The smoc-schema team strives to create a
+The modo-schema team strives to create a
 welcoming environment for editors, users and other contributors.
 Please carefully read our [Code of Conduct](CODE_OF_CONDUCT.md).
 
@@ -70,7 +70,7 @@ Please submit a [Pull Request][pulls] to submit a new term for consideration.
     - Never work on the main branch, always work on an issue/feature branch
     - Core developers can work on branches off origin rather than forks
     - Always create a PR on a branch to maximize transparency of what you are doing
-    - PRs should be reviewed and merged in a timely fashion by the smoc-schema technical leads
+    - PRs should be reviewed and merged in a timely fashion by the modo-schema technical leads
     - PRs that do not pass GitHub actions should never be merged
     - In the case of git conflicts, the contributor should try and resolve the conflict
     - If a PR fails a GitHub action check, the contributor should try and resolve the issue in a timely fashion
@@ -112,7 +112,7 @@ Core developers should read the material on the [LinkML site](https://linkml.io/
 [about-branches]: https://docs.github.com/en/pull-requests/collaborating-with-pull-requests/proposing-changes-to-your-work-with-pull-requests/about-branches
 [about-issues]: https://docs.github.com/en/issues/tracking-your-work-with-issues/about-issues
 [about-pulls]: https://docs.github.com/en/pull-requests/collaborating-with-pull-requests/proposing-changes-to-your-work-with-pull-requests/about-pull-requests
-[issues]: https://github.com/sdsc-ordes/smoc-schema/issues/
-[pulls]: https://github.com/sdsc-ordes/smoc-schema/pulls/
+[issues]: https://github.com/sdsc-ordes/modo-schema/issues/
+[pulls]: https://github.com/sdsc-ordes/modo-schema/pulls/
 
 We recommend also reading [GitHub Pull Requests: 10 Tips to Know](https://blog.mergify.com/github-pull-requests-10-tips-to-know/)

Makefile

@@ -132,7 +132,7 @@ examples/%.ttl: src/data/examples/%.yaml
 
 test-examples: examples/output
 
-examples/output: src/smoc_schema/schema/smoc_schema.yaml
+examples/output: src/modo_schema/schema/modo_schema.yaml
 	mkdir -p $@
 	$(RUN) linkml-run-examples \
 		--output-formats json \

NOTICE

@@ -1,4 +1,4 @@
-smoc-schema
+modo-schema
 Copyright 2024 - Swiss Data Science Center (SDSC)
 A partnership between École Polytechnique Fédérale de Lausanne (EPFL) and
 Eidgenössische Technische Hochschule Zürich (ETHZ).

about.yaml

@@ -1,5 +1,5 @@
 ---
-name: smoc_schema
+name: modo_schema
 author: SDSC-ORD
 description: Metadata schema for the SMOC Multi-Omics Digital Object
-source_schema_path: src/smoc_schema/schema/smoc_schema.yaml
+source_schema_path: src/modo_schema/schema/modo_schema.yaml

examples/README.md

@@ -1,5 +1,5 @@
-# Examples of use of smoc_schema
+# Examples of use of modo_schema
 
-This folder contains example data conforming to smoc_schema
+This folder contains example data conforming to modo_schema
 
 The source for these is in [src/data](../src/data/examples)

mkdocs.yml

@@ -1,5 +1,5 @@
 ---
-site_name: "smoc-schema"
+site_name: "modo-schema"
 theme:
   name: material
   # palette:
@@ -14,8 +14,8 @@ nav:
   # - Home: home.md
   - Index: index.md
   - About: about.md
-site_url: https://sdsc-ordes.github.io/smoc-schema
-repo_url: https://github.com/sdsc-ordes/smoc-schema
+site_url: https://sdsc-ordes.github.io/modo-schema
+repo_url: https://github.com/sdsc-ordes/modo-schema
 
 # Uncomment this block to enable use of Google Analytics.
 # Replace the property value with your own ID.

project/jsonld/smoc_schema.context.jsonld → project/jsonld/modo_schema.context.jsonld

@@ -1,8 +1,8 @@
 {
    "comments": {
       "description": "Auto generated by LinkML jsonld context generator",
-      "generation_date": "2024-01-17T12:05:19",
-      "source": "smoc_schema.yaml"
+      "generation_date": "2024-02-21T17:20:54",
+      "source": "modo_schema.yaml"
    },
    "@context": {
       "EDAM": "http://edamontology.org/",
@@ -19,11 +19,11 @@
       "bioschemas": "https://bioschemas.org/",
       "example": "https://example.org/",
       "linkml": "https://w3id.org/linkml/",
+      "modos": "https://w3id.org/sdsc-ordes/modo-schema/",
       "schema": "http://schema.org/",
       "skos": "http://www.w3.org/2004/02/skos/core#",
-      "smoc": "https://w3id.org/sdsc-ordes/smoc-schema/",
       "sphn": "https://biomedit.ch/rdf/sphn-schema/sphn#",
-      "@vocab": "https://w3id.org/sdsc-ordes/smoc-schema/",
+      "@vocab": "https://w3id.org/sdsc-ordes/modo-schema/",
       "creation_date": {
          "@type": "xsd:dateTime"
       },