chore: regen

sdsc-ordes · Nov 8, 2024 · 7bd1e50 · 7bd1e50
1 parent 4a41e86
commit 7bd1e50
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Showing 7 changed files with 314 additions and 465 deletions.
diff --git a/project/excel/modos_schema.xlsx b/project/excel/modos_schema.xlsx
diff --git a/project/jsonld/modos_schema.context.jsonld b/project/jsonld/modos_schema.context.jsonld
@@ -1,7 +1,7 @@
 {
    "comments": {
       "description": "Auto generated by LinkML jsonld context generator",
-      "generation_date": "2024-10-23T16:01:04",
+      "generation_date": "2024-11-08T09:56:38",
       "source": "modos_schema.yaml"
    },
    "@context": {
@@ -100,7 +100,7 @@
          "@id": "omics_type"
       },
       "sample_processing": {
-         "@type": "@id",
+         "@type": "xsd:anyURI",
          "@id": "sample_processing"
       },
       "sequence_md5": {

diff --git a/project/jsonld/modos_schema.jsonld b/project/jsonld/modos_schema.jsonld
@@ -1080,9 +1080,9 @@
   ],
   "metamodel_version": "1.7.0",
   "source_file": "modos_schema.yaml",
-  "source_file_date": "2024-10-23T15:50:05",
-  "source_file_size": 8488,
-  "generation_date": "2024-10-23T16:01:04",
+  "source_file_date": "2024-11-08T09:56:24",
+  "source_file_size": 9291,
+  "generation_date": "2024-11-08T09:56:39",
   "@type": "SchemaDefinition",
   "@context": [
     "project/jsonld/modos_schema.context.jsonld",

diff --git a/project/jsonschema/modos_schema.schema.json b/project/jsonschema/modos_schema.schema.json
@@ -172,7 +172,10 @@
                     "items": {
                         "type": "string"
                     },
-                    "type": "array"
+                    "type": [
+                        "array",
+                        "null"
+                    ]
                 }
             },
             "required": [
@@ -401,29 +404,41 @@
                 },
                 "description": {
                     "description": "A human-readable description for a thing",
-                    "type": "string"
+                    "type": [
+                        "string",
+                        "null"
+                    ]
                 },
                 "has_reference": {
                     "description": "Specifies the reference coordinate system used by an omics dataset.",
                     "items": {
                         "type": "string"
                     },
-                    "type": "array"
+                    "type": [
+                        "array",
+                        "null"
+                    ]
                 },
                 "has_sample": {
                     "description": "Biological sample included or described by a given thing.",
                     "items": {
                         "type": "string"
                     },
-                    "type": "array"
+                    "type": [
+                        "array",
+                        "null"
+                    ]
                 },
                 "id": {
                     "description": "A unique identifier for a thing",
                     "type": "string"
                 },
                 "name": {
                     "description": "A human-readable name for a thing",
-                    "type": "string"
+                    "type": [
+                        "string",
+                        "null"
+                    ]
                 }
             },
             "required": [
@@ -640,7 +655,7 @@
                     "description": "The biological sex of a sample."
                 },
                 "source_material": {
-                    "description": "The biological source from which the sample was isolated (tissue, organ).\nShould be a tissue or organ code URI from the UBERON ontology.\nSee: [https://bioregistry.io/registry/uberon](https://bioregistry.io/registry/uberon)\n",
+                    "description": "The biological source from which the sample was isolated (tissue, organ).\nShould be a code URI from the [UBERON](https://bioregistry.io/registry/uberon) ontology or [fairgenomes biospecimen types](https://raw.githubusercontent.com/fairgenomes/fairgenomes-semantic-model/refs/tags/v1.2/generated/ontology/fair-genomes-biospecimentypes.ttl).\n",
                     "type": [
                         "string",
                         "null"