Version 3.8 #481

sepandhaghighi · 2023-01-31T13:35:45Z

Reference Issues/PRs

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Version 3.8

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Bumps [numpy](https://github.com/numpy/numpy) from 1.23.5 to 1.24.0. - [Release notes](https://github.com/numpy/numpy/releases) - [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst) - [Commits](numpy/numpy@v1.23.5...v1.24.0) --- updated-dependencies: - dependency-name: numpy dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <[email protected]> Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* fix : Codacy error (unused variable) fixed. * fix : docstring `Curve.__init__` fixed. * update : `README.md` updated. * update : document updated (`sample_weight`). * fix : minor edits in `README.md`.

* fix : doc_run.bat updated * fix : doc_to_html.bat updated * doc : CHANGELOG updated

* feat : distance method added #349 #350 * doc : minor edit in docstring * fix : minor edit in distance method error handler * edit : minor pep8 edits. * add : `BatageljBren` metric added. * add : `BaulieuI` metric added. * add : `BaulieuII` metric added. * add : `BaulieuIII` metric added. * add : `BaulieuIV` metric added. * add : `BaulieuV` metric added. * add : `BaulieuVI` metric added. * add : `BaulieuVII` metric added. * add : `BaulieuVIII` metric added. * add : `BaulieuIX` metric added. * add : `BaulieuX` metric. * add : `BaulieuXI` metric. * add : `BaulieuXII` metric. * add : `BaulieuXIII` metric. * add : `BaulieuXIV` metric. * add : `BaulieuXV` metric. * add : `BeniniI` metric. * add : `BeniniII` metric. * add : `Canberra` metric. * add : `Clement` metric. * add : `ConsonniTodeschiniI` metric. * add : `ConsonniTodeschiniII` metric. * add : `ConsonniTodeschiniIII` metric. * add : `ConsonniTodeschiniIV` metric. * add : `ConsonniTodeschiniV` metric. * doc : Distance.ipynb added * fix : __init__.py updated * reformat refs #349 #350 * Add Abydos ref #349 #350 * doc : Distance.ipynb updated * fix : verified_test.py updated * fix : error_test.py updated * fix : function_test.py updated * doc : Document.ipynb updated * fix : autopep8 * doc : CHANGELOG updated * doc : Document updated * doc : minor edit in Distance.ipynb titles * doc : Baulieu IV formula fixed * doc : Distance notebook added to notebook_check.py * doc : distance method docstring updated * doc : verified_test.py links updated * doc : minor edit in Distance.ipynb style Co-authored-by: sadrasabouri <[email protected]> Co-authored-by: alirezazolanvari <[email protected]>

Bumps [numpy](https://github.com/numpy/numpy) from 1.24.0 to 1.24.1. - [Release notes](https://github.com/numpy/numpy/releases) - [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst) - [Commits](numpy/numpy@v1.24.0...v1.24.1) --- updated-dependencies: - dependency-name: numpy dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <[email protected]> Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* add : `__contains__` method added. * change : `__contains__` method place changed. * add : `__getitem__` method added. * fix : docstring fixed. * edit : `__getitem__` functionality edited. * update : docstring updated. * fix : minor issue fixed. * doc : minor edit in getitem and contains methods docstring * doc : Document updated * doc : minor edit in getitem and contains methods docstring * doc : minor edit in getitem and contains methods docstring * doc : minor edit in getitem and contains methods docstring * doc : minor edit in getitem and contains methods docstring * doc : minor edit in getitem method docstring Co-authored-by: sepandhaghighi <[email protected]>

* fix : minor edit in position method test * fix : minor edit in compare test * fix : minor edit in online_help function test * doc : CHANGELOG updated

* Add lambda interpretation function * Add Krippendorﬀ’s alpha interpretation function * Add Pearson's C inerpretation function * minor edits in docstrings * Add kappa benchmark list * Change default overall bechmark weight * Add new benchmarks params * Add new benchmarks to overall stats * Add sort function * Change sort method * fix minor bug in lambda analysis func * Change compare results based on the new added overall benchmarks * Change output reports based on the new added overall benchmarks * Change overall stats based on the new added overall benchmarks * Add dunc test for the new overal benchmarks * Minor edits on test results * Add the new overall benchmarks results to the tests * Add new overall benchmarks * Minor edits * Fix minor bug in sort function * Minor edit in Document * Fix minor edit in sort docstring * Resolve some PR comments * doc : Document updated #479 * doc : Compare section in Document updated #479 * doc : Compare example updated * doc : CHANGELOG updated --------- Co-authored-by: sepandhaghighi <[email protected]>

* fix : `relabel` method bug fixed. * log : changes logged. * test : tests added. * change : keeping the original class order.

sepandhaghighi · 2023-01-31T13:37:37Z

@alirezazolanvari @sadrasabouri Hi folks
Please complete this review by Wednesday- 2023-02-01 - 11:59 AM GMT+3:30
Notice: Only review, don't need to merge

alirezazolanvari · 2023-01-31T14:42:46Z

CHANGELOG.md

+- `relabel` method sort bug fixed
+- `README.md` modified
+- Document modified
+- Test system modified


Shouldn't we mention the changes in compare overall benchmarks and overall benchmarks weights?

You are right!

Compare overall benchmarks default weights updated

Good?

fixed in f2c225a

codecov-commenter · 2023-01-31T22:52:38Z

Codecov Report

Merging #481 (f2c225a) into master (1760e37) will increase coverage by 0.16%.
The diff coverage is 99.33%.

📣 This organization is not using Codecov’s GitHub App Integration. We recommend you install it so Codecov can continue to function properly for your repositories. Learn more

@@            Coverage Diff             @@
##           master     #481      +/-   ##
==========================================
+ Coverage   99.13%   99.28%   +0.16%     
==========================================
  Files          12       13       +1     
  Lines        2629     2913     +284     
  Branches      430      447      +17     
==========================================
+ Hits         2606     2892     +286     
+ Misses          9        8       -1     
+ Partials       14       13       -1

Impacted Files	Coverage Δ
pycm/pycm_interpret.py	`98.82% <94.29%> (-1.18%)`	⬇️
pycm/pycm_compare.py	`100.00% <100.00%> (+0.85%)`	⬆️
pycm/pycm_curve.py	`97.03% <100.00%> (ø)`
pycm/pycm_distance.py	`100.00% <100.00%> (ø)`
pycm/pycm_handler.py	`100.00% <100.00%> (ø)`
pycm/pycm_obj.py	`98.88% <100.00%> (+0.27%)`	⬆️
pycm/pycm_output.py	`96.94% <100.00%> (+0.74%)`	⬆️
pycm/pycm_overall_func.py	`100.00% <100.00%> (ø)`
pycm/pycm_param.py	`100.00% <100.00%> (ø)`
pycm/pycm_util.py	`99.69% <100.00%> (+0.01%)`	⬆️
... and 3 more

Help us with your feedback. Take ten seconds to tell us how you rate us. Have a feature suggestion? Share it here.

dependabot bot and others added 12 commits December 19, 2022 13:48

Minor Edits (#472)

85ae844

* fix : Codacy error (unused variable) fixed. * fix : docstring `Curve.__init__` fixed. * update : `README.md` updated. * update : document updated (`sample_weight`). * fix : minor edits in `README.md`.

Scripts (#473)

48f5d92

* fix : doc_run.bat updated * fix : doc_to_html.bat updated * doc : CHANGELOG updated

Test (#477)

7b91fa6

* fix : minor edit in position method test * fix : minor edit in compare test * fix : minor edit in online_help function test * doc : CHANGELOG updated

fix : Distance.ipynb section added to doc_to_html.bat (#478)

f4ca413

Relabel Bug Fixed (#480)

260d5d7

* fix : `relabel` method bug fixed. * log : changes logged. * test : tests added. * change : keeping the original class order.

rel : migrate to version 3.8

72b9133

doc : CHANGELOG updated

900d7eb

sepandhaghighi added release nlnet labels Jan 31, 2023

sepandhaghighi added this to the PYCM 3.8 milestone Jan 31, 2023

sepandhaghighi requested review from alirezazolanvari and sadrasabouri January 31, 2023 13:35

sepandhaghighi self-assigned this Jan 31, 2023

sadrasabouri approved these changes Jan 31, 2023

View reviewed changes

alirezazolanvari reviewed Jan 31, 2023

View reviewed changes

doc : CHANGELOG updated

f2c225a

sepandhaghighi requested a review from alirezazolanvari January 31, 2023 22:47

alirezazolanvari approved these changes Jan 31, 2023

View reviewed changes

sepandhaghighi merged commit be1d8e2 into master Feb 1, 2023

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Version 3.8 #481

Version 3.8 #481

sepandhaghighi commented Jan 31, 2023

sepandhaghighi commented Jan 31, 2023

alirezazolanvari Jan 31, 2023

sepandhaghighi Jan 31, 2023

sepandhaghighi Jan 31, 2023

codecov-commenter commented Jan 31, 2023 •

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Version 3.8 #481

Version 3.8 #481

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sepandhaghighi commented Jan 31, 2023

Reference Issues/PRs

What does this implement/fix? Explain your changes.

Any other comments?

sepandhaghighi commented Jan 31, 2023

alirezazolanvari Jan 31, 2023

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sepandhaghighi Jan 31, 2023

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sepandhaghighi Jan 31, 2023

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codecov-commenter commented Jan 31, 2023 • edited Loading

Codecov Report

codecov-commenter commented Jan 31, 2023 •

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