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unikmer v0.10.0

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@shenwei356 shenwei356 released this 21 May 15:11
· 208 commits to master since this release

Changes

  • v0.10.0
    • unikmer: fix loading custom taxonomy files.
    • unikmer count:
      • new flag -d for only count duplicated k-mers, for removing singleton in FASTQ.
      • fix nil pointer bug of -t.
    • unikmer split: fix memery and last odd k-mer mising bug for given ONE sorted input file.
    • unikmer sort: skip loading taxonomy data when neither -u or -d given.
    • unikmer diff: 2X speedup, and requiring 1th file being sorted.
    • unikmer inter: 2-5X speedup, and requiring all files being sorted, sorted output by default.