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Updated: 2021 July 24

This is the Wiki for the Long-Read Proteogenomics workflow. The workflow was written in the Nextflow workflow language.

The analyses performed on the output of the Long-Read Proteogenomics workflow output for the manuscript may be retrieved from Zenodo Badge are found in the companion repository Long-Read Proteomics analyses.

This modular workflow is beneficial to both the Transcriptomics and Proteomics fields. The data from both Long-Read IsoSeq sequencing with PacBio and mass spectrometry used in the classification and analysis of Jurkat cells and described in the publication 'Enhanced protein isoform characterization through long-read proteogenomics'