Replace B1+ maps by ones that can be opened in FSLeyes (#19)

shimming-toolbox · Feb 22, 2022 · 24b7ebf · 24b7ebf
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Showing 12 changed files with 3 additions and 148 deletions.
diff --git a/ds_tb1/sub-tb1tfl/fmap/sub-tb1tfl_TB1TFL_coronal.json b/ds_tb1/sub-tb1tfl/fmap/sub-tb1tfl_TB1TFL_coronal.json
diff --git a/ds_tb1/sub-tb1tfl/fmap/sub-tb1tfl_TB1TFL_coronal.nii.gz b/ds_tb1/sub-tb1tfl/fmap/sub-tb1tfl_TB1TFL_coronal.nii.gz
diff --git a/ds_tb1/sub-tb1tfl/fmap/sub-tb1tfl_TB1TFL_sagittal.json b/ds_tb1/sub-tb1tfl/fmap/sub-tb1tfl_TB1TFL_sagittal.json
diff --git a/ds_tb1/sub-tb1tfl/fmap/sub-tb1tfl_TB1TFL_sagittal.nii.gz b/ds_tb1/sub-tb1tfl/fmap/sub-tb1tfl_TB1TFL_sagittal.nii.gz
diff --git a/ds_tb1/sub-tb1tfl/rfmap/sub-tb1tfl_run-01_TB1map_uncombined.json b/ds_tb1/sub-tb1tfl/rfmap/sub-tb1tfl_run-01_TB1map_uncombined.json
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+{"Modality": "MR", "MagneticFieldStrength": 7, "ImagingFrequency": 297.2, "Manufacturer": "Siemens", "ManufacturersModelName": "Investigational_Device_7T", "InstitutionName": "Hospital", "InstitutionalDepartmentName": "Department", "InstitutionAddress": "Street StreetNo,City,District,CA,ZIP", "DeviceSerialNumber": "79017", "StationName": "AWP79017", "BodyPartExamined": "CSPINE", "PatientPosition": "HFS", "ProcedureStepDescription": "Development^Dr. Cohen-Adad", "SoftwareVersions": "syngo MR E12", "MRAcquisitionType": "2D", "SeriesDescription": "standard_tra", "ProtocolName": "standard_tra", "ScanningSequence": "GR", "SequenceVariant": "SK\\SP", "SequenceName": "*tfl2d1_16", "SeriesNumber": 53, "AcquisitionTime": "12:16:59.472500", "AcquisitionNumber": 1, "ImageComments": "Complex uncombined B1+ map (nT/V)", "SliceThickness": 7, "SpacingBetweenSlices": 14, "SAR": 0.00443249, "EchoTime": 0.00153, "RepetitionTime": 3.76, "SpoilingState": true, "FlipAngle": 5, "PartialFourier": 1, "BaseResolution": 64, "ShimSetting": [133, -20, 10, -75, 9, -147, -112, -224], "TxRefAmp": 400, "PhaseResolution": 1, "ReceiveCoilName": "NP11_ACDC_SPINE", "ReceiveCoilActiveElements": "1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H", "PulseSequenceDetails": "%SiemensSeq%\\tfl_rfmap", "RefLinesPE": 16, "CoilCombinationMethod": "Sum of Squares", "ConsistencyInfo": "N4_VE12U_LATEST_20181126", "MatrixCoilMode": "GRAPPA", "MultibandAccelerationFactor": 5, "PercentPhaseFOV": 68.75, "PercentSampling": 100, "PhaseEncodingSteps": 44, "AcquisitionMatrixPE": 44, "ReconMatrixPE": 44, "ParallelReductionFactorInPlane": 2, "PixelBandwidth": 440, "DwellTime": 1.78e-05, "PhaseEncodingDirection": "j-", "ImageOrientationPatientDICOM": [-1, 0, 0, 0, 1, 0], "ImageOrientationText": "Tra", "InPlanePhaseEncodingDirectionDICOM": "COL", "ConversionSoftware": "dcm2niix", "ConversionSoftwareVersion": "v1.0.20211006", "Dcm2bidsVersion": "2.1.4"}
diff --git a/ds_tb1/sub-tb1tfl/rfmap/sub-tb1tfl_run-01_TB1map_uncombined.nii.gz b/ds_tb1/sub-tb1tfl/rfmap/sub-tb1tfl_run-01_TB1map_uncombined.nii.gz
diff --git a/ds_tb1/sub-tb1tfl/rfmap/sub-tb1tfl_run-02_TB1map_uncombined.json b/ds_tb1/sub-tb1tfl/rfmap/sub-tb1tfl_run-02_TB1map_uncombined.json
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+{"Modality": "MR", "MagneticFieldStrength": 7, "ImagingFrequency": 297.2, "Manufacturer": "Siemens", "ManufacturersModelName": "Investigational_Device_7T", "InstitutionName": "Hospital", "InstitutionalDepartmentName": "Department", "InstitutionAddress": "Street StreetNo,City,District,CA,ZIP", "DeviceSerialNumber": "79017", "StationName": "AWP79017", "BodyPartExamined": "CSPINE", "PatientPosition": "HFS", "ProcedureStepDescription": "Development^Dr. Cohen-Adad", "SoftwareVersions": "syngo MR E12", "MRAcquisitionType": "2D", "SeriesDescription": "standard_cor", "ProtocolName": "standard_cor", "ScanningSequence": "GR", "SequenceVariant": "SK\\SP", "SequenceName": "*tfl2d1_16", "SeriesNumber": 54, "AcquisitionTime": "12:19:4.552500", "AcquisitionNumber": 1, "ImageComments": "Complex uncombined B1+ map (nT/V)", "SliceThickness": 5, "SpacingBetweenSlices": 10, "SAR": 0.00701462, "EchoTime": 0.00163, "RepetitionTime": 3.76, "SpoilingState": true, "FlipAngle": 5, "PartialFourier": 1, "BaseResolution": 64, "ShimSetting": [133, -20, 10, -75, 9, -147, -112, -224], "TxRefAmp": 400, "PhaseResolution": 1, "ReceiveCoilName": "NP11_ACDC_SPINE", "ReceiveCoilActiveElements": "1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H", "PulseSequenceDetails": "%SiemensSeq%\\tfl_rfmap", "RefLinesPE": 16, "CoilCombinationMethod": "Sum of Squares", "ConsistencyInfo": "N4_VE12U_LATEST_20181126", "MatrixCoilMode": "GRAPPA", "MultibandAccelerationFactor": 5, "PercentPhaseFOV": 218.75, "PercentSampling": 100, "PhaseEncodingSteps": 140, "AcquisitionMatrixPE": 140, "ReconMatrixPE": 140, "ParallelReductionFactorInPlane": 2, "PixelBandwidth": 440, "DwellTime": 1.78e-05, "PhaseEncodingDirection": "i", "ImageOrientationPatientDICOM": [-1, 0, 0, 0, 0, 1], "ImageOrientationText": "Cor", "InPlanePhaseEncodingDirectionDICOM": "ROW", "ConversionSoftware": "dcm2niix", "ConversionSoftwareVersion": "v1.0.20211006", "Dcm2bidsVersion": "2.1.4"}
diff --git a/ds_tb1/sub-tb1tfl/rfmap/sub-tb1tfl_run-02_TB1map_uncombined.nii.gz b/ds_tb1/sub-tb1tfl/rfmap/sub-tb1tfl_run-02_TB1map_uncombined.nii.gz
diff --git a/ds_tb1/sub-tb1tfl/rfmap/sub-tb1tfl_run-03_TB1map_uncombined.json b/ds_tb1/sub-tb1tfl/rfmap/sub-tb1tfl_run-03_TB1map_uncombined.json
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+{"Modality": "MR", "MagneticFieldStrength": 7, "ImagingFrequency": 297.2, "Manufacturer": "Siemens", "ManufacturersModelName": "Investigational_Device_7T", "InstitutionName": "Hospital", "InstitutionalDepartmentName": "Department", "InstitutionAddress": "Street StreetNo,City,District,CA,ZIP", "DeviceSerialNumber": "79017", "StationName": "AWP79017", "BodyPartExamined": "CSPINE", "PatientPosition": "HFS", "ProcedureStepDescription": "Development^Dr. Cohen-Adad", "SoftwareVersions": "syngo MR E12", "MRAcquisitionType": "2D", "SeriesDescription": "standard_sag", "ProtocolName": "standard_sag", "ScanningSequence": "GR", "SequenceVariant": "SK\\SP", "SequenceName": "*tfl2d1_16", "SeriesNumber": 55, "AcquisitionTime": "12:21:7.597500", "AcquisitionNumber": 1, "ImageComments": "Complex uncombined B1+ map (nT/V)", "SliceThickness": 5, "SpacingBetweenSlices": 10, "SAR": 0.00464767, "EchoTime": 0.00163, "RepetitionTime": 3.76, "SpoilingState": true, "FlipAngle": 5, "PartialFourier": 1, "BaseResolution": 64, "ShimSetting": [133, -20, 10, -75, 9, -147, -112, -224], "TxRefAmp": 400, "PhaseResolution": 1, "ReceiveCoilName": "NP11_ACDC_SPINE", "ReceiveCoilActiveElements": "1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H", "PulseSequenceDetails": "%SiemensSeq%\\tfl_rfmap", "RefLinesPE": 16, "CoilCombinationMethod": "Sum of Squares", "ConsistencyInfo": "N4_VE12U_LATEST_20181126", "MatrixCoilMode": "GRAPPA", "MultibandAccelerationFactor": 5, "PercentPhaseFOV": 81.25, "PercentSampling": 100, "PhaseEncodingSteps": 52, "AcquisitionMatrixPE": 52, "ReconMatrixPE": 52, "ParallelReductionFactorInPlane": 2, "PixelBandwidth": 440, "DwellTime": 1.78e-05, "PhaseEncodingDirection": "i", "ImageOrientationPatientDICOM": [0, -1, 0, 0, 0, 1], "ImageOrientationText": "Sag", "InPlanePhaseEncodingDirectionDICOM": "ROW", "ConversionSoftware": "dcm2niix", "ConversionSoftwareVersion": "v1.0.20211006", "Dcm2bidsVersion": "2.1.4"}
diff --git a/ds_tb1/sub-tb1tfl/rfmap/sub-tb1tfl_run-03_TB1map_uncombined.nii.gz b/ds_tb1/sub-tb1tfl/rfmap/sub-tb1tfl_run-03_TB1map_uncombined.nii.gz
diff --git a/...-tb1tfl/fmap/sub-tb1tfl_TB1TFL_axial.json → .../053_tmp_standard_tra_20210928093219.json b/...-tb1tfl/fmap/sub-tb1tfl_TB1TFL_axial.json → .../053_tmp_standard_tra_20210928093219.json
diff --git a/...b1tfl/fmap/sub-tb1tfl_TB1TFL_axial.nii.gz → ...53_tmp_standard_tra_20210928093219.nii.gz b/...b1tfl/fmap/sub-tb1tfl_TB1TFL_axial.nii.gz → ...53_tmp_standard_tra_20210928093219.nii.gz
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		{"Modality": "MR", "MagneticFieldStrength": 7, "ImagingFrequency": 297.2, "Manufacturer": "Siemens", "ManufacturersModelName": "Investigational_Device_7T", "InstitutionName": "Hospital", "InstitutionalDepartmentName": "Department", "InstitutionAddress": "Street StreetNo,City,District,CA,ZIP", "DeviceSerialNumber": "79017", "StationName": "AWP79017", "BodyPartExamined": "CSPINE", "PatientPosition": "HFS", "ProcedureStepDescription": "Development^Dr. Cohen-Adad", "SoftwareVersions": "syngo MR E12", "MRAcquisitionType": "2D", "SeriesDescription": "standard_tra", "ProtocolName": "standard_tra", "ScanningSequence": "GR", "SequenceVariant": "SK\\SP", "SequenceName": "*tfl2d1_16", "SeriesNumber": 53, "AcquisitionTime": "12:16:59.472500", "AcquisitionNumber": 1, "ImageComments": "Complex uncombined B1+ map (nT/V)", "SliceThickness": 7, "SpacingBetweenSlices": 14, "SAR": 0.00443249, "EchoTime": 0.00153, "RepetitionTime": 3.76, "SpoilingState": true, "FlipAngle": 5, "PartialFourier": 1, "BaseResolution": 64, "ShimSetting": [133, -20, 10, -75, 9, -147, -112, -224], "TxRefAmp": 400, "PhaseResolution": 1, "ReceiveCoilName": "NP11_ACDC_SPINE", "ReceiveCoilActiveElements": "1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H", "PulseSequenceDetails": "%SiemensSeq%\\tfl_rfmap", "RefLinesPE": 16, "CoilCombinationMethod": "Sum of Squares", "ConsistencyInfo": "N4_VE12U_LATEST_20181126", "MatrixCoilMode": "GRAPPA", "MultibandAccelerationFactor": 5, "PercentPhaseFOV": 68.75, "PercentSampling": 100, "PhaseEncodingSteps": 44, "AcquisitionMatrixPE": 44, "ReconMatrixPE": 44, "ParallelReductionFactorInPlane": 2, "PixelBandwidth": 440, "DwellTime": 1.78e-05, "PhaseEncodingDirection": "j-", "ImageOrientationPatientDICOM": [-1, 0, 0, 0, 1, 0], "ImageOrientationText": "Tra", "InPlanePhaseEncodingDirectionDICOM": "COL", "ConversionSoftware": "dcm2niix", "ConversionSoftwareVersion": "v1.0.20211006", "Dcm2bidsVersion": "2.1.4"}