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Add ImageOrientationText tag to B1 json as created by recent versions…
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… of dcm2niix (#16)

Updated json files with new version of dcm2niix
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@gaspardcereza
gaspardcereza authored Nov 25, 2021
1 parent e8e8bf4 commit 364d9e3
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Showing 3 changed files with 219 additions and 237 deletions.
152 changes: 73 additions & 79 deletions b1_maps/nifti/TB1map_axial.json
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Original file line number Diff line number Diff line change
@@ -1,80 +1,74 @@
{
"Modality": "MR",
"MagneticFieldStrength": 7,
"ImagingFrequency": 297.2,
"Manufacturer": "Siemens",
"ManufacturersModelName": "Investigational_Device_7T",
"InstitutionName": "Hospital",
"InstitutionalDepartmentName": "Department",
"InstitutionAddress": "Street StreetNo,City,District,CA,ZIP",
"DeviceSerialNumber": "79017",
"StationName": "AWP79017",
"BodyPartExamined": "CSPINE",
"PatientPosition": "HFS",
"ProcedureStepDescription": "Development^Dr. Cohen-Adad",
"SoftwareVersions": "syngo MR E12",
"MRAcquisitionType": "2D",
"SeriesDescription": "standard_tra",
"ProtocolName": "standard_tra",
"ScanningSequence": "GR",
"SequenceVariant": "SK\\SP",
"SequenceName": "*tfl2d1_16",
"SeriesNumber": 53,
"AcquisitionTime": "12:16:59.472500",
"AcquisitionNumber": 1,
"ImageComments": "flip angle map, TraRefAmpl: 400.0 V",
"SliceThickness": 7,
"SpacingBetweenSlices": 14,
"SAR": 0.00443249,
"EchoTime": 0.00153,
"RepetitionTime": 3.76,
"FlipAngle": 5,
"PartialFourier": 1,
"BaseResolution": 64,
"ShimSetting": [
133,
-20,
10,
-75,
9,
-147,
-112,
-224
],
"TxRefAmp": 400,
"PhaseResolution": 1,
"ReceiveCoilName": "NP11_ACDC_SPINE",
"ReceiveCoilActiveElements": "1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H",
"PulseSequenceDetails": "%SiemensSeq%\\tfl_rfmap",
"RefLinesPE": 16,
"ConsistencyInfo": "N4_VE12U_LATEST_20181126",
"MultibandAccelerationFactor": 5,
"PercentPhaseFOV": 68.75,
"PercentSampling": 100,
"PhaseEncodingSteps": 44,
"AcquisitionMatrixPE": 44,
"ReconMatrixPE": 44,
"ParallelReductionFactorInPlane": 2,
"PixelBandwidth": 440,
"DwellTime": 1.78e-05,
"PhaseEncodingDirection": "j-",
"SliceTiming": [
0,
0,
0,
0,
0
],
"ImageOrientationPatientDICOM": [
1,
0,
0,
0,
1,
0
],
"InPlanePhaseEncodingDirectionDICOM": "COL",
"ConversionSoftware": "dcm2niix",
"ConversionSoftwareVersion": "v1.0.20201102",
"Dcm2bidsVersion": "2.1.4"
}
"Modality": "MR",
"MagneticFieldStrength": 7,
"ImagingFrequency": 297.2,
"Manufacturer": "Siemens",
"ManufacturersModelName": "Investigational_Device_7T",
"InstitutionName": "Hospital",
"InstitutionalDepartmentName": "Department",
"InstitutionAddress": "Street StreetNo,City,District,CA,ZIP",
"DeviceSerialNumber": "79017",
"StationName": "AWP79017",
"BodyPartExamined": "CSPINE",
"PatientPosition": "HFS",
"ProcedureStepDescription": "Development^Dr. Cohen-Adad",
"SoftwareVersions": "syngo MR E12",
"MRAcquisitionType": "2D",
"SeriesDescription": "standard_tra",
"ProtocolName": "standard_tra",
"ScanningSequence": "GR",
"SequenceVariant": "SK\\SP",
"SequenceName": "*tfl2d1_16",
"SeriesNumber": 53,
"AcquisitionTime": "12:16:59.472500",
"AcquisitionNumber": 1,
"ImageComments": "flip angle map, TraRefAmpl: 400.0 V",
"SliceThickness": 7,
"SpacingBetweenSlices": 14,
"SAR": 0.00443249,
"EchoTime": 0.00153,
"RepetitionTime": 3.76,
"SpoilingState": true,
"FlipAngle": 5,
"PartialFourier": 1,
"BaseResolution": 64,
"ShimSetting": [
133,
-20,
10,
-75,
9,
-147,
-112,
-224 ],
"TxRefAmp": 400,
"PhaseResolution": 1,
"ReceiveCoilName": "NP11_ACDC_SPINE",
"ReceiveCoilActiveElements": "1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H",
"PulseSequenceDetails": "%SiemensSeq%\\tfl_rfmap",
"RefLinesPE": 16,
"CoilCombinationMethod": "Sum of Squares",
"ConsistencyInfo": "N4_VE12U_LATEST_20181126",
"MatrixCoilMode": "GRAPPA",
"MultibandAccelerationFactor": 5,
"PercentPhaseFOV": 68.75,
"PercentSampling": 100,
"PhaseEncodingSteps": 44,
"AcquisitionMatrixPE": 44,
"ReconMatrixPE": 44,
"ParallelReductionFactorInPlane": 2,
"PixelBandwidth": 440,
"DwellTime": 1.78e-05,
"PhaseEncodingDirection": "j-",
"ImageOrientationPatientDICOM": [
1,
0,
0,
0,
1,
0 ],
"ImageOrientationText": "Tra",
"InPlanePhaseEncodingDirectionDICOM": "COL",
"ConversionSoftware": "dcm2niix",
"ConversionSoftwareVersion": "v1.0.20211006"
}
152 changes: 73 additions & 79 deletions b1_maps/nifti/TB1map_coronal.json
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Original file line number Diff line number Diff line change
@@ -1,80 +1,74 @@
{
"Modality": "MR",
"MagneticFieldStrength": 7,
"ImagingFrequency": 297.2,
"Manufacturer": "Siemens",
"ManufacturersModelName": "Investigational_Device_7T",
"InstitutionName": "Hospital",
"InstitutionalDepartmentName": "Department",
"InstitutionAddress": "Street StreetNo,City,District,CA,ZIP",
"DeviceSerialNumber": "79017",
"StationName": "AWP79017",
"BodyPartExamined": "CSPINE",
"PatientPosition": "HFS",
"ProcedureStepDescription": "Development^Dr. Cohen-Adad",
"SoftwareVersions": "syngo MR E12",
"MRAcquisitionType": "2D",
"SeriesDescription": "standard_cor",
"ProtocolName": "standard_cor",
"ScanningSequence": "GR",
"SequenceVariant": "SK\\SP",
"SequenceName": "*tfl2d1_16",
"SeriesNumber": 54,
"AcquisitionTime": "12:19:4.552500",
"AcquisitionNumber": 1,
"ImageComments": "flip angle map, TraRefAmpl: 400.0 V",
"SliceThickness": 5,
"SpacingBetweenSlices": 10,
"SAR": 0.00701462,
"EchoTime": 0.00163,
"RepetitionTime": 3.76,
"FlipAngle": 5,
"PartialFourier": 1,
"BaseResolution": 64,
"ShimSetting": [
133,
-20,
10,
-75,
9,
-147,
-112,
-224
],
"TxRefAmp": 400,
"PhaseResolution": 1,
"ReceiveCoilName": "NP11_ACDC_SPINE",
"ReceiveCoilActiveElements": "1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H",
"PulseSequenceDetails": "%SiemensSeq%\\tfl_rfmap",
"RefLinesPE": 16,
"ConsistencyInfo": "N4_VE12U_LATEST_20181126",
"MultibandAccelerationFactor": 5,
"PercentPhaseFOV": 218.75,
"PercentSampling": 100,
"PhaseEncodingSteps": 140,
"AcquisitionMatrixPE": 140,
"ReconMatrixPE": 140,
"ParallelReductionFactorInPlane": 2,
"PixelBandwidth": 440,
"DwellTime": 1.78e-05,
"PhaseEncodingDirection": "i",
"SliceTiming": [
0,
0,
0,
0,
0
],
"ImageOrientationPatientDICOM": [
1,
0,
0,
0,
0,
-1
],
"InPlanePhaseEncodingDirectionDICOM": "ROW",
"ConversionSoftware": "dcm2niix",
"ConversionSoftwareVersion": "v1.0.20201102",
"Dcm2bidsVersion": "2.1.4"
}
"Modality": "MR",
"MagneticFieldStrength": 7,
"ImagingFrequency": 297.2,
"Manufacturer": "Siemens",
"ManufacturersModelName": "Investigational_Device_7T",
"InstitutionName": "Hospital",
"InstitutionalDepartmentName": "Department",
"InstitutionAddress": "Street StreetNo,City,District,CA,ZIP",
"DeviceSerialNumber": "79017",
"StationName": "AWP79017",
"BodyPartExamined": "CSPINE",
"PatientPosition": "HFS",
"ProcedureStepDescription": "Development^Dr. Cohen-Adad",
"SoftwareVersions": "syngo MR E12",
"MRAcquisitionType": "2D",
"SeriesDescription": "standard_cor",
"ProtocolName": "standard_cor",
"ScanningSequence": "GR",
"SequenceVariant": "SK\\SP",
"SequenceName": "*tfl2d1_16",
"SeriesNumber": 54,
"AcquisitionTime": "12:19:4.552500",
"AcquisitionNumber": 1,
"ImageComments": "flip angle map, TraRefAmpl: 400.0 V",
"SliceThickness": 5,
"SpacingBetweenSlices": 10,
"SAR": 0.00701462,
"EchoTime": 0.00163,
"RepetitionTime": 3.76,
"SpoilingState": true,
"FlipAngle": 5,
"PartialFourier": 1,
"BaseResolution": 64,
"ShimSetting": [
133,
-20,
10,
-75,
9,
-147,
-112,
-224 ],
"TxRefAmp": 400,
"PhaseResolution": 1,
"ReceiveCoilName": "NP11_ACDC_SPINE",
"ReceiveCoilActiveElements": "1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H",
"PulseSequenceDetails": "%SiemensSeq%\\tfl_rfmap",
"RefLinesPE": 16,
"CoilCombinationMethod": "Sum of Squares",
"ConsistencyInfo": "N4_VE12U_LATEST_20181126",
"MatrixCoilMode": "GRAPPA",
"MultibandAccelerationFactor": 5,
"PercentPhaseFOV": 218.75,
"PercentSampling": 100,
"PhaseEncodingSteps": 140,
"AcquisitionMatrixPE": 140,
"ReconMatrixPE": 140,
"ParallelReductionFactorInPlane": 2,
"PixelBandwidth": 440,
"DwellTime": 1.78e-05,
"PhaseEncodingDirection": "i",
"ImageOrientationPatientDICOM": [
1,
0,
0,
0,
0,
-1 ],
"ImageOrientationText": "Cor",
"InPlanePhaseEncodingDirectionDICOM": "ROW",
"ConversionSoftware": "dcm2niix",
"ConversionSoftwareVersion": "v1.0.20211006"
}
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