Moved up python imports to fix os.environ for SCT

shimming-toolbox · Jan 10, 2024 · 2a4c3d0 · 2a4c3d0
1 parent 73df6f2
commit 2a4c3d0
Showing 1 changed file with 27 additions and 27 deletions.
diff --git a/data_processing.ipynb b/data_processing.ipynb
@@ -72,7 +72,31 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "23ed8513",
+   "id": "4f78c5ea",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "# Necessary imports\n",
+    "\n",
+    "import os\n",
+    "import re\n",
+    "import json\n",
+    "import subprocess\n",
+    "import glob\n",
+    "import matplotlib.pyplot as plt\n",
+    "import numpy as np\n",
+    "import nibabel as nib\n",
+    "import pandas as pd\n",
+    "from scipy.interpolate import interp1d\n",
+    "from scipy.ndimage import uniform_filter1d\n",
+    "from scipy.stats import f_oneway\n",
+    "from statsmodels.stats.multicomp import pairwise_tukeyhsd"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "425724d9",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -84,7 +108,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "76ce58e9",
+   "id": "d774d3c0",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -102,7 +126,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "de61b330",
+   "id": "83822d93",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -115,30 +139,6 @@
     "os.environ['PATH'] += f\":/content/spinalcordtoolbox/bin\""
    ]
   },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "id": "4f78c5ea",
-   "metadata": {},
-   "outputs": [],
-   "source": [
-    "# Necessary imports\n",
-    "\n",
-    "import os\n",
-    "import re\n",
-    "import json\n",
-    "import subprocess\n",
-    "import glob\n",
-    "import matplotlib.pyplot as plt\n",
-    "import numpy as np\n",
-    "import nibabel as nib\n",
-    "import pandas as pd\n",
-    "from scipy.interpolate import interp1d\n",
-    "from scipy.ndimage import uniform_filter1d\n",
-    "from scipy.stats import f_oneway\n",
-    "from statsmodels.stats.multicomp import pairwise_tukeyhsd"
-   ]
-  },
   {
    "cell_type": "code",
    "execution_count": null,