Change branch names to main

.github/workflows/main.yml

@@ -4,7 +4,7 @@ name: deploy-book
 on:
   push:
     branches:
-    - mb/neurolibre
+    - main
     # If your git repository has the Jupyter Book within some-subfolder next to
     # unrelated files, you can make this run only if a file within that specific
     # folder has been modified.

.gitignore

@@ -139,6 +139,7 @@ _build/
 content/data/
 content/neuromod-anat-brain-qmri/
 content/spinalcord_results/
+data/
 
 # Cloned repos
 content/analysis*

README.md

@@ -1,8 +1,8 @@
 # rf-shimming-7t
 
 [![DOI Badge](https://img.shields.io/badge/DOI-10.18112%2Fopenneuro.ds004906-blue)](https://openneuro.org/datasets/ds004906)
-[![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/shimming-toolbox/rf-shimming-7t/blob/mb/neurolibre/content/index.ipynb)
-[![launch binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/shimming-toolbox/rf-shimming-7t/mb/neurolibre?labpath=content%2Findex.ipynb)
+[![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/shimming-toolbox/rf-shimming-7t/blob/main/content/index.ipynb)
+[![launch binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/shimming-toolbox/rf-shimming-7t/main?labpath=content%2Findex.ipynb)
 
 Reproducible Notebook for the paper "RF shimming in the cervical spinal cord at 7T"
 
@@ -33,7 +33,7 @@ To run locally on your computer, you must first have Docker installed, running,
 
 Then, you need to install [repo2docker](https://github.com/jupyterhub/repo2docker). Install via pip: `pip install jupyter-repo2docker`
 
-To launch a Docker session from this repo, run `repo2docker --ref mb/neurolibre https://www.github.com/shimming-toolbox/rf-shimming-7t`. After it's completed, it will provie you with a weblink, copy and open this link in a browser to open the Jupyter Notebook session.
+To launch a Docker session from this repo, run `repo2docker --ref main https://www.github.com/shimming-toolbox/rf-shimming-7t`. After it's completed, it will provie you with a weblink, copy and open this link in a browser to open the Jupyter Notebook session.
 
 ## Run locally with Jupyter Notebook
 
@@ -42,7 +42,7 @@ Install [Spinal Cord Toolbox](https://spinalcordtoolbox.com/user_section/install
 Clone this repository
 ~~~
 git clone https://github.com/shimming-toolbox/rf-shimming-7t.git
-git checkout mb/neurolibre
+git checkout main
 cd rf-shimming-7t
 ~~~
 

content/_config.yml

@@ -16,7 +16,7 @@ launch_buttons:
 repository:
   url: https://github.com/shimming-toolbox/rf-shimming-7t  # Online location of your book
   path_to_book: content  # Optional path to your book, relative to the repository root
-  branch: mb/neurolibre  # Which branch of the repository should be used when creating links (optional)
+  branch: main  # Which branch of the repository should be used when creating links (optional)
 
 only_build_toc_files: true
 

content/index.ipynb

@@ -209,7 +209,7 @@
     "```shell\n",
     "git clone https://github.com/shimming-toolbox/rf-shimming-7t.git\n",
     "cd rf-shimming-7t\n",
-    "git checkout mb/neurolibre\n",
+    "git checkout main\n",
     "```\n",
     "\n",
     "* Install requirements\n",