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jcohenadad committed Jan 24, 2024
1 parent d7f4221 commit b4326a6
Showing 1 changed file with 1 addition and 3 deletions.
4 changes: 1 addition & 3 deletions data_processing.ipynb
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Expand Up @@ -191,12 +191,10 @@
"outputs": [],
"source": [
"# Run segmentation on GRE scan\n",
"# ℹ️ The \"CoV reduction\" RF shimming scenario was chosen as the segmentation baseline due to the more \n",
"# homogeneous signal intensity in the I-->S direction, which results in a better segmentation peformance\n",
"# in the C7-T2 region\n",
"\n",
"for subject in subjects:\n",
" os.chdir(os.path.join(path_data, subject, \"anat\"))\n",
" # The \"CoV\" RF shimming scenario was chosen as the segmentation baseline due to the more homogeneous signal intensity in the I-->S direction, which results in a better segmentation peformance in the C7-T2 region\n",
" fname_manual_seg = os.path.join(path_labels, subject, \"anat\", f\"{subject}_acq-CoV_T2starw_label-SC_seg.nii.gz\")\n",
" if os.path.exists(fname_manual_seg):\n",
" # Manual segmentation already exists. Copy it to local folder\n",
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