An intuitive, opensource LC-MS data processing engine
from
- Quick start
- ElMaven features
- Bugs and feature requests
- Documentation
- Contributing
- Contributors
- References
- Acknowledgment
- Copyright and license
Elmaven is supported by both 32 and 64 bit architectures on Ubuntu and Windows.
- Download the Maven latest version or daily build depending on your OS and architecture
- Install Elmaven on windows or on Ubuntu by following the installation instructions.
- After installing, click on the Elmaven icon to launch Elmaven.
- Elmaven loads with two windows: one for logging the application status and another, Elmaven application window for data analysis.
Maven and Elmaven share following features:
- Multi-file chromatographic aligner
- Peak-feature detector
- Isotope and adduct calculator
- Formula predictor
- Pathway visualizer
- Isotopic flux animator
Elmaven is robust, faster and with more user friendly features compared to Maven.
Existing bugs and feature requests can be found on El-maven github issue page. Please search existing bugs and feature requests before you file a bug or request a feature.
Please refer to Gitwiki for El maven user documentation.
You are welcome to contribute. Please go through Elmaven’s contributing guidelines and for coding guidelines, please contact Elucidata team. These guidelines include directions for coding standards, opening issues and development guidelines.
Pull requests must include relevant unit tests. All the functional features are to be tested before committing the code.
- Maven team at Princeton University
- Eugene Melamud
- Victor Chubukov
- George Sabu
- Sahil
- Rahul Kumar
- Giridhari
- Kiran Varghese
- Naman Gupta
To understand Maven and Elmaven workflows and features, please refer to following literature on Maven:
- Metabolomic Analysis and Visualization Engine for LC-MSData, Eugene Melamud, Livia Vastag, and Joshua D. Rabinowitz, Analytical Chemistry 2010 82 (23), 9818-9826
- LC-MS Data Processing with MAVEN: A Metabolomic Analysis and Visualization Engine, Clasquin, M. F., Melamud, E. and Rabinowitz, J. D. 2012, Current Protocols in Bioinformatics. 37:14.11.1-14.11.23.
Elmaven would not have been possible without the unwavering support, constant feedback and financial support from Agios. Elmaven thanks metabolomics community for it’s immense contribution in taking the tool forward and a great sucess.
Code and documentation copyright 2017 Elucidata Inc. Code released under the GPL v2.0. Documentation is released under MIT license.