Docs deploy - Fix incorrect GA arguments (#5272) #5999
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| name: Test Skyportal Migrations | |
| on: | |
| # Run only if potential changes in database schema, or if made on | |
| # main | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| paths: | |
| - "baselayer" | |
| - "skyportal/models.py" | |
| - "skyportal/models/**" | |
| - "alembic/versions/**" | |
| - "skyportal/enum_types.py" | |
| - "skyportal/facility_apis/__init__.py" | |
| - "requirements.txt" | |
| jobs: | |
| test: | |
| name: Test SkyPortal migrations | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 90 | |
| env: | |
| # We only check migrations from this point onward, since we know | |
| # this specific commit to have migration integrity. | |
| # | |
| # This commit can be updated from time to time, if necessary | |
| # (e.g., to get access to a newer data loader or dependencies). | |
| # Pick any commit known to have passed the migration tests on | |
| # CI, or which has deployed successfully. | |
| MIGRATION_REFERENCE: 53699ab25149fc6b1fb21f420de95fdd485ec933 | |
| services: | |
| postgres: | |
| image: postgres:15 | |
| env: | |
| POSTGRES_USER: skyportal | |
| POSTGRES_PASSWORD: anything | |
| ports: | |
| - 5432:5432 | |
| # needed because the postgres container does not provide a | |
| # healthcheck | |
| options: >- | |
| --health-cmd pg_isready | |
| --health-interval 10s | |
| --health-timeout 5s | |
| --health-retries 5 | |
| steps: | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.10" | |
| - uses: actions/setup-node@v4 | |
| with: | |
| node-version: 20 | |
| - name: Checkout main | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| ref: main | |
| submodules: true | |
| - uses: actions/cache@v4 | |
| with: | |
| path: | | |
| ~/.npm | |
| key: ${{ runner.os }}-npm-${{ hashFiles('package.json') }} | |
| restore-keys: | | |
| ${{ runner.os }}-npm-${{ hashFiles('package.json') }} | |
| ${{ runner.os }}-npm- | |
| - uses: actions/cache@v4 | |
| with: | |
| path: | | |
| ~/.cache/pip | |
| key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements*.txt') }} | |
| restore-keys: | | |
| ${{ runner.os }}-pip-${{ hashFiles('**/requirements*.txt') }} | |
| ${{ runner.os }}-pip- | |
| # caching dustmap & sncosmo files is dependent on their corresponding | |
| # python package versions, so we use that as the cache key | |
| - uses: actions/cache@v4 | |
| with: | |
| path: | | |
| persistentdata/dustmap/sfd | |
| key: ${{ runner.os }}-dustmap-${{ hashFiles('**/requirements*.txt') }} | |
| restore-keys: | | |
| ${{ runner.os }}-dustmap-${{ hashFiles('**/requirements*.txt') }} | |
| ${{ runner.os }}-dustmap- | |
| - uses: actions/cache@v4 | |
| with: | |
| path: | | |
| ~/.astropy/cache/sncosmo/bandpasses | |
| key: ${{ runner.os }}-sncosmo-${{ hashFiles('**/requirements*.txt') }} | |
| restore-keys: | | |
| ${{ runner.os }}-sncosmo-${{ hashFiles('**/requirements*.txt') }} | |
| ${{ runner.os }}-sncosmo- | |
| - name: Install system dependencies | |
| run: | | |
| sudo apt update -y | |
| ### firefox installation | |
| sudo snap remove firefox | |
| sudo add-apt-repository ppa:mozillateam/ppa | |
| printf 'Package: *\nPin: release o=LP-PPA-mozillateam\nPin-Priority: 1001' | sudo tee /etc/apt/preferences.d/mozilla-firefox | |
| sudo apt install -y wget unzip firefox nginx libcurl4-gnutls-dev libgnutls28-dev | |
| pip install pip==24.0 | |
| pip install wheel numpy | |
| export NPM_PACKAGES="${HOME}/.npm-packages" | |
| export PATH=${NPM_PACKAGES}/bin:$PATH | |
| export NODE_PATH="$NPM_PACKAGES/lib/node_modules:$NODE_PATH" | |
| sudo npm -g install npm@latest | |
| which python; python --version | |
| echo npm $(npm --version) | |
| echo node $(node --version) | |
| nginx -v | |
| firefox --version | |
| - name: Install SkyPortal dependencies | |
| run: | | |
| export PYTHONPATH=$PYTHONPATH:$(pwd) | |
| # do not be so demanding of the npm packaging, needed until we get to mui 5 | |
| export NPM_CONFIG_LEGACY_PEER_DEPS="true" | |
| make dependencies | |
| pip install black | |
| pip install fiona==1.9.6 # 1.10.0 breaks geopandas | |
| - name: Save current Alembic head on main | |
| run: | | |
| # Get the head line from Alembic history output | |
| head=$( PYTHONPATH=. alembic history | grep '(head)' ) | |
| # Split by space; index 2 should be latest revision | |
| tokens=($head) | |
| current_head=${tokens[2]} | |
| echo ${current_head} | |
| echo "CURRENT_HEAD=${current_head}" >> $GITHUB_ENV | |
| - name: Checkout migration reference commit | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| ref: ${{ env.MIGRATION_REFERENCE }} | |
| submodules: true | |
| - name: Write SkyPortal configs | |
| run: | | |
| cat << EOF > config.yaml | |
| database: | |
| database: skyportal | |
| host: localhost | |
| port: 5432 | |
| user: skyportal | |
| password: anything | |
| EOF | |
| - name: Initialize SkyPortal | |
| run: | | |
| # Usually, we create databases on the local machine, so | |
| # `createdb` just works out of the box. However, when doing | |
| # this on a server, as in our case, we need to specify extra | |
| # options. | |
| # | |
| # db_init should not complain if the databases exist already | |
| # | |
| echo "localhost:5432:*:skyportal:anything" > ~/.pgpass | |
| chmod 600 ~/.pgpass | |
| createdb -h localhost -U skyportal skyportal_test | |
| psql -U skyportal -h localhost -c "GRANT ALL PRIVILEGES ON DATABASE skyportal_test TO skyportal;" skyportal_test | |
| export NPM_CONFIG_LEGACY_PEER_DEPS="true" | |
| make db_init | |
| pip list --format=columns | |
| npm ls --depth 0 | |
| # Stamp Alembic HEAD | |
| PYTHONPATH=. alembic -x config=config.yaml stamp head | |
| - name: Test loading demo data | |
| run: | | |
| export NPM_CONFIG_LEGACY_PEER_DEPS="true" | |
| make run & | |
| sleep 180 && make load_demo_data | |
| kill %1 | |
| - name: Checkout PR branch | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| submodules: true | |
| clean: false | |
| - name: Check for migration branching | |
| run: | | |
| # Make sure latest revision on main is included in Alembic history | |
| n_current_head=$( PYTHONPATH=. alembic history | grep -c $CURRENT_HEAD ) | |
| if [[ $n_current_head -eq 0 ]] | |
| then | |
| cat << EOF | |
| The current head Alembic revision on main is not present in this branch's | |
| Alembic history. Please merge in the latest commit from main into this PR. | |
| EOF | |
| exit 1 | |
| else | |
| echo "Alembic history includes the latest on main." | |
| fi | |
| # Make sure there are not multiple heads to the Alembic history | |
| num_heads=$( PYTHONPATH=. alembic history | grep -c '(head)' ) | |
| if [[ $num_heads -ne 1 ]] | |
| then | |
| cat << EOF | |
| There is more than one head revision in this branch's Alembic history. | |
| Please resolve the branching revisions. | |
| EOF | |
| exit 1 | |
| else | |
| echo "Alembic history has no conflicts in branch." | |
| fi | |
| - name: Run migration | |
| run: | | |
| # do not be so demanding of the npm packaging, needed until we get to mui 5 | |
| export NPM_CONFIG_LEGACY_PEER_DEPS="true" | |
| # Update to latest dependencies | |
| make dependencies | |
| PYTHONPATH=. alembic -x config=config.yaml upgrade head | |
| PYTHONPATH=. alembic current | |
| - name: Check migration completeness with Alembic | |
| run: | | |
| # Try generating a new migration | |
| PYTHONPATH=. alembic -x config=config.yaml revision --autogenerate -m "Test migration" | |
| # The generated migration should be empty if the migration script provided in the PR | |
| # completely encompasses the changes in the database. | |
| pass_lines=$( cat alembic/versions/*test_migration.py | grep -c pass ) || true | |
| if [[ $pass_lines -ne 2 ]] | |
| then | |
| echo "Additional migrations needed: see the alembic-difference artifact." | |
| exit 1 | |
| else | |
| echo "All migrations included in script." | |
| fi | |
| - name: Create a fresh database | |
| run: | | |
| # Make new configs | |
| cat << EOF > config.yaml | |
| database: | |
| database: skyportal2 | |
| host: localhost | |
| port: 5432 | |
| user: skyportal | |
| password: anything | |
| EOF | |
| createdb -h localhost -U skyportal skyportal2 | |
| psql -U skyportal -h localhost -c "GRANT ALL PRIVILEGES ON DATABASE skyportal2 TO skyportal;" skyportal2 | |
| createdb -h localhost -U skyportal skyportal2_test | |
| psql -U skyportal -h localhost -c "GRANT ALL PRIVILEGES ON DATABASE skyportal2_test TO skyportal;" skyportal2_test | |
| export NPM_CONFIG_LEGACY_PEER_DEPS="true" | |
| make db_init | |
| make run & | |
| sleep 60 && make load_demo_data | |
| kill %1 | |
| PYTHONPATH=. alembic -x config=config.yaml stamp head | |
| - name: Compare databases with migra | |
| run: | | |
| pip install migra | |
| # SQL needed to go from migrated database to fresh database | |
| migra --unsafe postgresql://skyportal:anything@localhost:5432/skyportal postgresql://skyportal:anything@localhost:5432/skyportal2 > migra.sql || true | |
| if [[ $(cat migra.sql | wc -l) -ne 0 ]] | |
| then | |
| echo "Differences found between migrated database and fresh database. See the migra-difference artifact." | |
| exit 1 | |
| else | |
| echo "Migrated database and fresh database match." | |
| fi | |
| - name: Upload logs | |
| uses: actions/upload-artifact@v4 | |
| if: ${{ always() }} | |
| with: | |
| name: logs-migration | |
| path: log | |
| - name: Upload the Alembic diff | |
| uses: actions/upload-artifact@v4 | |
| if: ${{ always() }} | |
| with: | |
| name: alembic-difference | |
| path: alembic/versions/**test_migration.py | |
| - name: Upload migra diff | |
| uses: actions/upload-artifact@v4 | |
| if: ${{ always() }} | |
| with: | |
| name: migra-difference | |
| path: migra.sql |