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fix mixed model tool results page for lme4 and sommer; fix direct phe…
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…notyping page issues; additions to annotation page from file; allow protocol edits; show empty plots on geofieldmap and view only mode; implement marker validation for markersets; update certain brapi calls to 2.1 version; add new stability tool; add breeding_program type for breeding program folder.
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lukasmueller committed May 11, 2024
1 parent b1037fd commit b1f4329
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion cxgn/sgn
Submodule sgn updated 38 files
+217 −169 R/GCPC.R
+11 −6 R/mixed_models_sommer.R
+332 −117 R/stability/ammi_script.R
+2 −1 js/source/entries/mixedmodels.js
+78 −23 js/source/legacy/brapi/BrAPIFieldmap.js
+1 −1 lib/CXGN/BrAPI/v2/ExternalReferences.pm
+66 −32 lib/CXGN/BrAPI/v2/Images.pm
+46 −27 lib/CXGN/BrAPI/v2/ObservationVariables.pm
+33 −10 lib/CXGN/BrAPI/v2/SeedLots.pm
+9 −9 lib/CXGN/BrAPI/v2/ServerInfo.pm
+34 −12 lib/CXGN/BrAPI/v2/Traits.pm
+1 −1 lib/CXGN/Dataset.pm
+40 −5 lib/CXGN/Genotype/Protocol.pm
+61 −0 lib/CXGN/Genotype/ProtocolProp.pm
+89 −0 lib/CXGN/List/Validate/Plugin/Markers.pm
+176 −125 lib/CXGN/MixedModels.pm
+1 −1 lib/CXGN/Phenotypes/File.pm
+1 −0 lib/CXGN/Trial/Folder.pm
+1 −1 lib/SGN/Controller/AJAX/BrAPI.pm
+36 −16 lib/SGN/Controller/AJAX/GCPC.pm
+151 −3 lib/SGN/Controller/AJAX/GenotypingProtocol.pm
+42 −48 lib/SGN/Controller/AJAX/MixedModels.pm
+42 −25 lib/SGN/Controller/AJAX/Stability.pm
+10 −1 lib/SGN/Controller/GenotypeProtocol.pm
+186 −0 mason/breeders_toolbox/genotyping_protocol/edit_genotyping_protocol_details_dialog.mas
+10 −4 mason/breeders_toolbox/genotyping_protocol/index.mas
+31 −2 mason/breeders_toolbox/markers/manage_markers.mas
+5 −2 mason/breeders_toolbox/trial/phenotype_heatmap.mas
+5 −2 mason/site/toolbar/manage.mas
+6 −1 mason/site/toolbar/search_menu.mas
+139 −117 mason/tools/gcpc/index.mas
+740 −199 mason/tools/stability/index.mas
+1 −1 t/selenium2/03_dataset/dataset.t
+1 −1 t/unit/CXGN/MixedModels.t
+41 −0 t/unit_fixture/CXGN/Uploading/KASPGenotypes.t
+3 −3 t/unit_mech/AJAX/_BrAPIv2_core.t
+2 −2 t/unit_mech/AJAX/_BrAPIv2_germplasm.t
+17 −46 t/unit_mech/AJAX/_BrAPIv2_phenotyping.t

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