Initial commit

LICENSE

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+MIT License
+
+Copyright (c) 2022 codingstrand
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

README.md

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+
+Use this repo to create repos for other sites.

bash_history

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+perl db/run_all_patches.pl -u postgres -p postgres -h breedbase_db -d breedbase -e admin

breedbase_nginx.conf

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+#
+server {
+
+       listen 80;
+
+	root /var/www/html;
+
+	server_name sample.breedbase.org;
+
+	client_max_body_size 1G;
+
+	location ~/brapi/ {
+	    auth_basic "off";
+            proxy_read_timeout 100m;
+            proxy_pass http://127.0.0.1:8080; 
+        }
+
+        location ~/user/login {
+           auth_basic "off";
+           proxy_pass http://127.0.0.1:8080;
+        }
+
+        location ~/.well-known/openid-configuration {
+           auth_basic "off";
+           proxy_pass http://127.0.0.1:8080;
+        }
+
+        location ~/brapi/authorize {
+           auth_basic "off";
+           proxy_pass http://127.0.0.1:8080;
+        }
+
+
+
+	location / {
+	    proxy_pass http://127.0.0.1:8080;
+            proxy_set_header  X-Real-IP  $remote_addr;
+            proxy_set_header  X-Forwarded-For  $proxy_add_x_forwarded_for;
+            proxy_set_header  Host $host;
+            proxy_read_timeout 100m;
+	    auth_basic "Restricted - Authorized Users Only";
+            auth_basic_user_file /etc/nginx/.htpasswd;
+	}
+
+
+}
+

crontab

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+# /etc/crontab: system-wide crontab
+# Unlike any other crontab you don't have to run the `crontab'
+# command to install the new version when you edit this file
+# and files in /etc/cron.d. These files also have username fields,
+# that none of the other crontabs do.
+
+SHELL=/bin/sh
+PATH=/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin
+
+# m h dom mon dow user	command
+17 *	* * *	root    cd / && run-parts --report /etc/cron.hourly
+25 6	* * *	root	test -x /usr/sbin/anacron || ( cd / && run-parts --report /etc/cron.daily )
+47 6	* * 7	root	test -x /usr/sbin/anacron || ( cd / && run-parts --report /etc/cron.weekly )
+52 6	1 * *	root	test -x /usr/sbin/anacron || ( cd / && run-parts --report /etc/cron.monthly )
+#
+
+### BREEDBASE SPECIFIC CRONTAB ENTRIES:
+#
+30 00   * * *   root    /db_dumps/dump
+
+###* * * * *    root     date

docker-compose.yml

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+version: "3.7"
+
+services:
+  breedbase:
+    image: breedbase/breedbase:latest
+    depends_on:
+      - breedbase_db
+    container_name: breedbase_web
+    ports:
+      - 8080:8080
+    volumes:
+      - webdata:/home/production/volume
+      - type: bind
+        source: /home/production/basesite/empty_db_without.test_users.sql
+        target: /home/production/empty_dump.sql
+#      - type: bind
+#        source: /home/production/sgn
+#        target: /home/production/cxgn/sgn
+      - type: bind
+        source: /home/production/basesite/sgn_local.conf
+        target: /home/production/cxgn/sgn/sgn_local.conf
+      - type: bind
+        source: /home/production/db_dumps
+        target: /db_dumps
+      - type: bind
+        source: /home/production/basesite/crontab
+        target: /etc/crontab
+      - type: bind
+        source: bash_history
+        target: /home/production/.bash_history
+
+  breedbase_db:
+    image: breedbase/pg:latest
+    container_name: breedbase_db
+    volumes:
+      - dbdata:/var/lib/postgresql/data
+
+volumes:
+  webdata:
+  dbdata:
+
+
+

dump

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+#!/bin/bash
+
+export DATE=`date --iso-8601`;
+
+echo "Dumping breedbase db, $DATE";
+
+rm $HOME/.pgpass
+
+echo "breedbase_db:5432:breedbase:postgres:postgres"> $HOME/.pgpass
+
+chmod 0600 $HOME/.pgpass
+
+ls -al $HOME/.pgpass
+
+pg_dump -h breedbase_db -U postgres -w -d breedbase > /db_dumps/breedbase_$DATE.sql
+