Scheduled Notebook Execution #212
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| name: Nightly Notebook Execution | |
| on: | |
| schedule: | |
| #- cron: '0 3 * * *' # run at 2 AM UTC | |
| - cron: '0 0 * * 0' # midnight sunday UTC | |
| env: | |
| ARCH_ON_CI: "normal" | |
| IS_CRON: "true" | |
| WEBBPSF_PATH: $HOME/data/webbpsf-data | |
| PYSYN_CDBS: $PWD/grp/redcat/trds/ | |
| jobs: | |
| gather-notebooks: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| matrix: ${{ steps.set-matrix.outputs.matrix }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - id: set-matrix | |
| #run: echo "::set-output name=matrix::$(find notebooks -name "*.ipynb" | jq -cnR '[inputs | select(length>0)]')" | |
| run: echo "matrix=$(find notebooks -name "*.ipynb" | jq -cnR '[inputs | select(length>0)]')" >> $GITHUB_OUTPUT | |
| nightly-notebook-execution: | |
| needs: gather-notebooks | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| notebooks: ${{ fromJson(needs.gather-notebooks.outputs.matrix) }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| #- run: | | |
| # pip install -r ${${{ matrix.notebooks }}%/*}/requirements.txt | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python 3.8.12 | |
| uses: actions/setup-python@v2 ## needed for caching | |
| with: | |
| python-version: 3.8.12 | |
| cache: 'pip' | |
| - name: Add conda to system path | |
| run: | | |
| # $CONDA is an environment variable pointing to the root of the miniconda directory | |
| echo $CONDA/bin >> $GITHUB_PATH | |
| - name: Install dependencies | |
| run: | | |
| #conda env update --file CIenvironment.yml --name base | |
| pip install -r pre-requirements.txt | |
| pip install -r requirements.txt | |
| pip install pytest | |
| pip install nbval | |
| pip install nbconvert | |
| - name: Execute notebooks | |
| run: | | |
| jupyter nbconvert --template classic --to html --execute "${{ matrix.notebooks }}" | |
| #- name: Validate notebooks | |
| # run: | | |
| # pytest --nbval "${{ matrix.notebooks }}" |