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Various Small Fixes/Improvements #1985

Merged
merged 44 commits into from
Sep 6, 2022
Merged

Various Small Fixes/Improvements #1985

merged 44 commits into from
Sep 6, 2022

Commits on Oct 11, 2021

  1. Initial commit

    @nickeener
    nickeener committed Oct 11, 2021
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Commits on Oct 12, 2021

  1. Updated comments

    @nickeener
    nickeener committed Oct 12, 2021
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  2. Changed filter_tally to rounds_used in decoded_intensity_table

    @nickeener
    nickeener committed Oct 12, 2021
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Commits on Oct 13, 2021

  1. Fixed validation errors

    @nickeener
    nickeener committed Oct 13, 2021
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Commits on Oct 17, 2021

  1. added tests for checkAll decoder

    @nickeener
    nickeener committed Oct 17, 2021
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Commits on Oct 18, 2021

  1. Merge branch 'spacetx:master' into master

    @nickeener
    nickeener authored Oct 18, 2021
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  2. Fixed imports order

    @nickeener
    nickeener committed Oct 18, 2021
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Commits on Oct 19, 2021

  1. include test updates

    @nickeener
    nickeener committed Oct 19, 2021
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  2. annotation fixes and speed improvements

    @nickeener
    nickeener committed Oct 19, 2021
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  3. added ray to requirements

    @nickeener
    nickeener committed Oct 19, 2021
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Commits on Oct 28, 2021

  1. More speed and memory improvements

    @nickeener
    nickeener committed Oct 28, 2021
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  2. Replaced ray w/ multiprocessing

    @nickeener
    nickeener committed Oct 28, 2021
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  3. Fix import order

    @nickeener
    nickeener committed Oct 28, 2021
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  4. few more fixes

    @nickeener
    nickeener committed Oct 28, 2021
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  5. Changed test to account for randomness

    @nickeener
    nickeener committed Oct 28, 2021
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  6. fix test

    @nickeener
    nickeener committed Oct 28, 2021
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Commits on Nov 7, 2021

  1. Added new filter step

    @nickeener
    nickeener committed Nov 7, 2021
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Commits on Jan 11, 2022

  1. Added input error checking and condition for empty results

    @nickeener
    nickeener committed Jan 11, 2022
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Commits on Jan 25, 2022

  1. Fixed channel bug

    @nickeener
    nickeener committed Jan 25, 2022
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Commits on Mar 30, 2022

  1. March 30 2022 big update

    @nickeener
    nickeener committed Mar 30, 2022
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Commits on Apr 2, 2022

  1. Updated comments

    @nickeener
    nickeener committed Apr 2, 2022
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Commits on May 5, 2022

  1. Updated comments and fixed mypy errors

    @nickeener
    nickeener committed May 5, 2022
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  2. Merge branch 'spacetx:master' into ray_2022

    @nickeener
    nickeener authored May 5, 2022
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Commits on May 9, 2022

  1. Swapped ray multiprocessing w/ standard Python

    @nickeener
    nickeener committed May 9, 2022
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Commits on May 17, 2022

  1. fixed function arg bug

    @nickeener
    nickeener committed May 17, 2022
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  2. mypy fix

    @nickeener
    nickeener committed May 17, 2022
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Commits on May 27, 2022

  1. bug fixes

    @nickeener
    nickeener committed May 27, 2022
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Commits on Jun 13, 2022

  1. fix

    @nickeener
    nickeener committed Jun 13, 2022
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Commits on Jun 22, 2022

  1. Added sphinx update to reqs

    @nickeener
    nickeener committed Jun 22, 2022
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  2. fixed error correction bug

    @nickeener
    nickeener committed Jun 22, 2022
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Commits on Jul 20, 2022

  1. reqs fix

    @nickeener
    nickeener committed Jul 20, 2022
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Commits on Jul 22, 2022

  1. Added better error catching

    @nickeener
    nickeener committed Jul 22, 2022
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Commits on Jul 26, 2022

  1. Added error catch for no decoded targets

    @nickeener
    nickeener committed Jul 26, 2022
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Commits on Jul 27, 2022

  1. fix

    @nickeener
    nickeener committed Jul 27, 2022
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  2. Added spot saving/loading

    @nickeener
    nickeener committed Jul 27, 2022
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  3. Replaced old seqfish notebook

    @nickeener
    nickeener committed Jul 27, 2022
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Commits on Jul 28, 2022

  1. Added ability to read in 3d external label image as mask

    @nickeener
    nickeener committed Jul 28, 2022
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  2. Modified BlobDetector to work when is_volume=False

    @nickeener
    nickeener committed Jul 28, 2022
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  3. Merge branch 'master' into ucsc_fixes

    @nickeener
    nickeener authored Jul 28, 2022
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Commits on Aug 2, 2022

  1. Speed improvements

    @nickeener
    nickeener committed Aug 2, 2022
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  2. Merge branch 'ucsc_fixes' of https://github.com/nickeener/starfish in… 

    …to ucsc_fixes
    @nickeener
    nickeener committed Aug 2, 2022
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  3. fix for windows test

    @nickeener
    nickeener committed Aug 2, 2022
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  4. retrigger checks

    @nickeener
    nickeener committed Aug 2, 2022
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  5. retrigger checks

    @nickeener
    nickeener committed Aug 2, 2022
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