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Release - 0.1.2
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@shanaxel42 shanaxel42 released this 19 Jun 20:47
· 421 commits to master since this release
0.1.2
23de97b
  • Refactor reduce to take an optional module and only a function name. (#1386)
  • Codify the expectation that in-place experiment construction does not rely on TileFetcher data (#1389)
  • Warn and return empty SpotAttributes when PixelDecoding finds 0 spots (#1400)
  • updating data.merfish link to full dataset (#1406)
  • Rename tile_coordinates to tile_identifier (#1401)
  • Support for irregular images in the builder (#1382)
  • Fix how we structure the run notebook rules. (#1384)
  • updated loading data docs and added image of napari viewer (#1387)
  • Format complete ISS experiment and expose in starfish.data (#1316)
  • Add concatenate method for ExpressionMatrix (#1381)
  • Add TransformsList repr (#1380)
  • Fix 3d smFISH notebook as well. (#1385)
  • Add custom clip Filter classes (#1376)
  • Fix smFISH notebook. (#1383)
  • Add Filter.Reduce (general dimension reduction for ImageStack) (#1342)
  • Handle denormalized numbers when normalizing intensities/codebooks (#1371)
  • TileFetcher formats complete 496 fov MERFISH dataset (#1341)
  • Refactor fov.getImage() to fov.getImages() (#1346)
  • Add the ability to write labeled experiments (#1374)
  • Add inplace TileFetcher module back to public builder API (#1375)
  • Always create Z coordinates, even on 4D datasets. (#1358)
  • Create an all-purpose ImageStack factory (#1348)
  • Remove physical_coordinate_calculator.py (#1352)
  • ImageStack parsers should provide coordinates as an array (#1351)
  • bump to slicedimage 3.1.1 (#1343)
  • Creating a standard starfish.wdl that can be run with any recipe file (#1364)
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